View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3237_low_128 (Length: 244)

Name: NF3237_low_128
Description: NF3237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3237_low_128
NF3237_low_128
[»] chr4 (2 HSPs)
chr4 (16-244)||(11528004-11528231)
chr4 (21-244)||(11458479-11458702)
[»] scaffold0039 (1 HSPs)
scaffold0039 (44-195)||(56035-56186)
[»] chr7 (1 HSPs)
chr7 (61-217)||(35726159-35726313)
[»] chr5 (2 HSPs)
chr5 (78-170)||(20515790-20515881)
chr5 (69-151)||(11971179-11971261)
[»] chr2 (1 HSPs)
chr2 (43-96)||(11267568-11267621)
[»] chr3 (2 HSPs)
chr3 (141-193)||(36543592-36543644)
chr3 (141-193)||(36564679-36564731)
[»] chr8 (1 HSPs)
chr8 (69-164)||(24248319-24248414)
[»] chr1 (1 HSPs)
chr1 (135-193)||(40344943-40345001)


Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 16 - 244
Target Start/End: Complemental strand, 11528231 - 11528004
Alignment:
Q  16 caaaataagtgcatagttggccatcaaaattttgaaacacatgccaagctgccaaactgaacaaaatgatccgcaattccagatggatcaattgatgaaa 115  Q
    |||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||    
T  11528231 caaagtaagtgcatagttggccgtcgaaattttgaaacacatgccaagctgccaaactgaacaaaatgatccgcaattccagatggatcaactgat-aaa 11528133  T
Q  116 aaccaagccaattgcatacaagatgccaaagagaactataaatattacaagtcaaaaataagtgatttgttgattcaagagacccacaaccactcacaca 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11528132 aaccaagccaattgcatacaagatgccaaagagaactataaatattacaagtcaaaaataagtgatttgttgattcaagagacccacaaccactcacaca 11528033  T
Q  216 aagctaggaatttgaagggatgtgtatac 244  Q
    |||||  ||||||||||||||||||||||    
T  11528032 aagctgagaatttgaagggatgtgtatac 11528004  T

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Target: chr4; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 21 - 244
Target Start/End: Original strand, 11458479 - 11458702
Alignment:
Q  21 taagtgcatagttggccatcaaaattttgaaacacatgccaagctgccaaactgaacaaaatgatccgcaattccagatggatcaattgatgaaaaacca 120  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||    
T  11458479 taagtgcatagttggccgtcaaaattttgaaacacatgccaagctgccaaactgaacaaaatgatccgcaattccagatggatcaacagatgaaaaacca 11458578  T
Q  121 agccaattgcatacaagatgccaaagagaactataaatattacaagtcaaaaataagtgatttgttgattcaagagacccacaaccactcacacaaagct 220  Q
    ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |    
T  11458579 agcaaattgcatacaagatgccaaatagaactataaatattacaagtcaaaaataagtgatttgttgattaaagagacccacaaccactcacacaaagtt 11458678  T
Q  221 aggaatttgaagggatgtgtatac 244  Q
      ||||||||||||||||||||||    
T  11458679 gagaatttgaagggatgtgtatac 11458702  T

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Target: scaffold0039 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 44 - 195
Target Start/End: Original strand, 56035 - 56186
Alignment:
Q  44 attttgaaacacatgccaagctgccaaactgaacaaaatgatccgcaattccagatggatcaattgatgaaaaaccaagccaattgcatacaagatgcca 143  Q
    ||||||||| || ||||||||| ||||| ||| ||||| ||||  |||||||| |  ||| || | |||||| ||||||||||||||| |||||||| ||    
T  56035 attttgaaaaacctgccaagctaccaaattgagcaaaacgatcaacaattccaaaatgattaactaatgaaataccaagccaattgcaaacaagatgtca 56134  T
Q  144 aagagaactataaatattacaagtcaaaaataagtgatttgttgattcaaga 195  Q
    ||||||||||  || |||||||||||||||||| | ||||  ||||||||||    
T  56135 aagagaactaataacattacaagtcaaaaataaattattttatgattcaaga 56186  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 61 - 217
Target Start/End: Complemental strand, 35726313 - 35726159
Alignment:
Q  61 aagctgccaaactgaacaaaatgatccgcaattccagatggatcaattgatgaaaaaccaagccaattgcatacaagatgccaaagagaactataaatat 160  Q
    ||||| ||||||| ||||||||||| |||||||  ||||||||||| |||| |||   |||||||||| || || |||||||||| ||||||| ||| ||    
T  35726313 aagctaccaaacttaacaaaatgattcgcaattttagatggatcaactgat-aaatctcaagccaattacaaacgagatgccaaaaagaacta-aaaaat 35726216  T
Q  161 tacaagtcaaaaataagtgatttgttgattcaagagacccacaaccactcacacaaa 217  Q
    |||| ||||| ||||| |  |||| |||||||  || |||||||||| ||| |||||    
T  35726215 tacacgtcaagaataaattgtttgctgattcataagtcccacaaccattcaaacaaa 35726159  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 78 - 170
Target Start/End: Original strand, 20515790 - 20515881
Alignment:
Q  78 aaaatgatccgcaattccagatggatcaattgatgaaaaaccaagccaattgcatacaagatgccaaagagaactataaatattacaagtcaa 170  Q
    |||||||||| |||||||| | ||||||| | ||||||| ||||| ||||||   ||||||||||||| ||||||| |||||||| |||||||    
T  20515790 aaaatgatccacaattccataaggatcaactaatgaaaa-ccaagtcaattgtgaacaagatgccaaaaagaactaaaaatattataagtcaa 20515881  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 151
Target Start/End: Complemental strand, 11971261 - 11971179
Alignment:
Q  69 aaactgaacaaaatgatccgcaattccagatggatcaattgatgaaaaaccaagccaattgcatacaagatgccaaagagaac 151  Q
    ||||| |||||||||||  | ||||||| |||||||||| || |||||| |||| |||||    |||||||||||||||||||    
T  11971261 aaactaaacaaaatgatttgtaattccatatggatcaatcgaagaaaaagcaagtcaattatgcacaagatgccaaagagaac 11971179  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 96
Target Start/End: Complemental strand, 11267621 - 11267568
Alignment:
Q  43 aattttgaaacacatgccaagctgccaaactgaacaaaatgatccgcaattcca 96  Q
    |||||||||| || ||||||||| | |||||| |||||||||||||||||||||    
T  11267621 aattttgaaaaacctgccaagctacaaaactgtacaaaatgatccgcaattcca 11267568  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 193
Target Start/End: Original strand, 36543592 - 36543644
Alignment:
Q  141 ccaaagagaactataaatattacaagtcaaaaataagtgatttgttgattcaa 193  Q
    ||||||||||||| | ||||||||| ||||||| || ||||||||||||||||    
T  36543592 ccaaagagaactaaagatattacaactcaaaaacaaatgatttgttgattcaa 36543644  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 193
Target Start/End: Complemental strand, 36564731 - 36564679
Alignment:
Q  141 ccaaagagaactataaatattacaagtcaaaaataagtgatttgttgattcaa 193  Q
    ||||||||||||| | ||||||||| ||||||| || ||||||| ||||||||    
T  36564731 ccaaagagaactaaagatattacaactcaaaaacaaatgatttgctgattcaa 36564679  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 69 - 164
Target Start/End: Original strand, 24248319 - 24248414
Alignment:
Q  69 aaactgaacaaaatgatccgcaattccagatggatcaattgatgaaaaaccaagccaattgcatacaagatgccaaagagaactataaatattaca 164  Q
    |||||||| |||||||||||||||| ||||| ||||||  ||| ||| |||||||||| |  | | || ||| |||||||||||  ||||||||||    
T  24248319 aaactgaataaaatgatccgcaatttcagatagatcaaccgatcaaataccaagccaactatagaaaacatgtcaaagagaactgaaaatattaca 24248414  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 193
Target Start/End: Complemental strand, 40345001 - 40344943
Alignment:
Q  135 aagatgccaaagagaactataaatattacaagtcaaaaataagtgatttgttgattcaa 193  Q
    |||||| |||||||||| | ||||||||| || |||||| || ||||||||||||||||    
T  40345001 aagatggcaaagagaacaaaaaatattacgagccaaaaacaaatgatttgttgattcaa 40344943  T

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