View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3237_low_132 (Length: 239)
Name: NF3237_low_132
Description: NF3237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3237_low_132 |
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Alignment Details
Target: chr5 (Bit Score: 173; Significance: 4e-93; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 36956267 - 36956488
Alignment:
| Q |
1 |
cttttactctcaaaatcgttatgccgctacttggaatcgctctcatttcattatcttttgctttcattgctggtctctacactgttattagtgaacttac |
100 |
Q |
| |
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|||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
36956267 |
cttttactctcaaaattgttgtgccgcttcttggaatcgctctcatttcattatcttttgctttcattgctggtctgtacactgttattagtgaacttaa |
36956366 |
T |
|
| Q |
101 |
ttggttggcaaatgtgtttctggttatggctctaatttttgttgcggttgtgannnnnnnatatatgcttcttttccttccatcatcatcaactagcaag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
36956367 |
ttggttggcaaatgtgtttctggttatggctctgatttttgttgcggttgtgatttttttatatatgcttcttttccttccatcatcatcaactagcaag |
36956466 |
T |
|
| Q |
201 |
ccattgtggtacatttctcact |
222 |
Q |
| |
|
|||||| ||||||||||||||| |
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|
| T |
36956467 |
ccattgcggtacatttctcact |
36956488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 7 - 220
Target Start/End: Original strand, 36935419 - 36935632
Alignment:
| Q |
7 |
ctctcaaaatcgttatgccgctacttggaatcgctctcatttcattatcttttgctttcattgctggtctctacactgttattagtgaacttacttggtt |
106 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||| ||| |||||||||| |||||||| |||||||||||||||||||| |||||||| | |||| |
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| T |
36935419 |
ctctcaaaatcgttatgccgcttcttggaatcgctcttattgcattatctttggctttcatggctggtctctacactgttatcagtgaactacgtcggtt |
36935518 |
T |
|
| Q |
107 |
ggcaaatgtgtttctggttatggctctaatttttgttgcggttgtgannnnnnnatatatgcttcttttccttccatcatcatcaactagcaagccattg |
206 |
Q |
| |
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| | |||||||||||||||||||| || |||||||| || ||||||| |||| |||||||||||||||||||| ||||||||||||| || ||| |
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| T |
36935519 |
gtccaatgtgtttctggttatggcactgatttttgtcgccgttgtgattttgttatatgtgcttcttttccttccatcaccatcaactagcaaccccttg |
36935618 |
T |
|
| Q |
207 |
tggtacatttctca |
220 |
Q |
| |
|
||||||||||||| |
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|
| T |
36935619 |
cggtacatttctca |
36935632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 7 - 217
Target Start/End: Original strand, 36948197 - 36948407
Alignment:
| Q |
7 |
ctctcaaaatcgttatgccgctacttggaatcgctctcatttcattatcttttgctttcattgctggtctctacactgttattagtgaacttacttggtt |
106 |
Q |
| |
|
|||| ||||| |||||||| | ||||||||||||||||| ||| | ||||| |||||||||||||| |||||||||||||| ||||||||||||||||| |
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| T |
36948197 |
ctctgaaaattgttatgccaattcttggaatcgctctcatctcactgtctttggctttcattgctggcctctacactgttatcagtgaacttacttggtt |
36948296 |
T |
|
| Q |
107 |
ggcaaatgtgtttctggttatggctctaatttttgttgcggttgtgannnnnnnatatatgcttcttttccttccatcatcatcaactagcaagccattg |
206 |
Q |
| |
|
|||||||||||||||||||||| | | |||||||||| ||||| || ||||||||| |||||||||||||||||||||||||||| |||||| |
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| T |
36948297 |
ggcaaatgtgtttctggttatgacattgatttttgttgtggttgagattcttttatatatgctccttttccttccatcatcatcaactagcataccattg |
36948396 |
T |
|
| Q |
207 |
tggtacatttc |
217 |
Q |
| |
|
|||||||||| |
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|
| T |
36948397 |
cggtacatttc |
36948407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 7 - 152
Target Start/End: Complemental strand, 37079522 - 37079377
Alignment:
| Q |
7 |
ctctcaaaatcgttatgccgctacttggaatcgctctcatttcattatcttttgctttcattgctggtctctacactgttattagtgaacttacttggtt |
106 |
Q |
| |
|
|||| ||||| || ||||| || ||||||||||||||| | ||| ||||||| ||||| || ||||| |||||||||||||| ||||||||||||||||| |
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|
| T |
37079522 |
ctctgaaaattgtgatgccacttcttggaatcgctctcgtctcactatctttggcttttatggctggactctacactgttatcagtgaacttacttggtt |
37079423 |
T |
|
| Q |
107 |
ggcaaatgtgtttctggttatggctctaatttttgttgcggttgtg |
152 |
Q |
| |
|
||||||||||||||||||| | ||| |||||| |||| ||||||| |
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| T |
37079422 |
ggcaaatgtgtttctggttgtagcttcaattttggttgtggttgtg |
37079377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 12 - 109
Target Start/End: Complemental strand, 37069757 - 37069660
Alignment:
| Q |
12 |
aaaatcgttatgccgctacttggaatcgctctcatttcattatcttttgctttcattgctggtctctacactgttattagtgaacttacttggttggc |
109 |
Q |
| |
|
|||||||| |||| || ||||||| |||||||||||| ||||||| |||||||| ||||||||||||||||||| |||||||||||||||||||| |
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| T |
37069757 |
aaaatcgtgttgccacttcttggaaccgctctcatttctctatctttggctttcatgactggtctctacactgttatcagtgaacttacttggttggc |
37069660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 129; Significance: 7e-67; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 12493557 - 12493336
Alignment:
| Q |
1 |
cttttactctcaaaatcgttatgccgctacttggaatcgctctcatttcattatcttttgctttcattgctggtctctacactgttattagtgaacttac |
100 |
Q |
| |
|
|||||||||||||||| || |||||||| |||||||||||||||||||| |||||||| |||||||| ||| |||| ||||||||||||||||||||||| |
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|
| T |
12493557 |
cttttactctcaaaatggtcatgccgcttcttggaatcgctctcatttcgttatctttggctttcatggctagtctttacactgttattagtgaacttac |
12493458 |
T |
|
| Q |
101 |
ttggttggcaaatgtgtttctggttatggctctaatttttgttgcggttgtgannnnnnnatatatgcttcttttccttccatcatcatcaactagcaag |
200 |
Q |
| |
|
||||||| ||||||||| |||||||||||| | |||||| |||||||||||| ||||||||| |||||||||||||||||||||||||||| |
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| T |
12493457 |
ttggttgtcaaatgtgtctctggttatggcattgatttttattgcggttgtgattgcgttatatatgctcagtttccttccatcatcatcaactagcaag |
12493358 |
T |
|
| Q |
201 |
ccattgtggtacatttctcact |
222 |
Q |
| |
|
|||||| ||||||||||||||| |
|
|
| T |
12493357 |
ccattgcggtacatttctcact |
12493336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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