View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3237_low_137 (Length: 237)

Name: NF3237_low_137
Description: NF3237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3237_low_137
NF3237_low_137
[»] chr6 (6 HSPs)
chr6 (14-223)||(27095683-27095893)
chr6 (158-219)||(11070729-11070789)
chr6 (180-220)||(19247349-19247389)
chr6 (168-219)||(15081654-15081705)
chr6 (164-192)||(21709311-21709339)
chr6 (164-192)||(22459956-22459984)
[»] chr7 (7 HSPs)
chr7 (163-223)||(7324349-7324409)
chr7 (164-219)||(8612642-8612697)
chr7 (26-121)||(7324198-7324293)
chr7 (158-195)||(11070058-11070095)
chr7 (167-215)||(12130049-12130096)
chr7 (164-192)||(22980575-22980603)
chr7 (164-192)||(22994226-22994254)
[»] chr2 (2 HSPs)
chr2 (162-215)||(24519886-24519938)
chr2 (164-192)||(32131284-32131312)
[»] chr1 (5 HSPs)
chr1 (164-216)||(45396947-45396998)
chr1 (162-207)||(10758957-10759001)
chr1 (164-192)||(21345490-21345518)
chr1 (164-192)||(39199303-39199331)
chr1 (164-192)||(47399230-47399258)
[»] chr3 (3 HSPs)
chr3 (169-219)||(11059318-11059367)
chr3 (164-216)||(10291143-10291194)
chr3 (164-192)||(18385321-18385349)
[»] chr8 (1 HSPs)
chr8 (162-194)||(42614540-42614572)
[»] scaffold0454 (1 HSPs)
scaffold0454 (164-192)||(13910-13938)
[»] scaffold0221 (1 HSPs)
scaffold0221 (164-192)||(10970-10998)
[»] chr5 (2 HSPs)
chr5 (164-192)||(22128276-22128304)
chr5 (158-194)||(24837102-24837138)
[»] chr4 (1 HSPs)
chr4 (164-192)||(16598768-16598796)


Alignment Details
Target: chr6 (Bit Score: 125; Significance: 2e-64; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 14 - 223
Target Start/End: Original strand, 27095683 - 27095893
Alignment:
Q  14 atgaatagcttgcctaactatcgttttccttagaatttatgttgtttctttccgttttatgcaactttttatgagggttttggcatagccccctctcttg 113  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||||| ||||||||||||| |||||||| ||||||    
T  27095683 atgaatagcttgcctaactatcgttttccttagaatttatgttggttctttccgttttctgcacctttttctgagggttttggcctagccccccctcttg 27095782  T
Q  114 tatatata-nnnnnnnnnnnnnnaataatatatatggagtaggcggtttcagttgggtgccaacctagttgggatgtttctggcgctccttgatgtctaa 212  Q
    ||||||||               |||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| ||||    
T  27095783 tatatatatttttccgtgtttttaataatatatatggagtaggcggtttcagttgggtgtcaacctagttaggatgtttctggcgctccttgatgcctaa 27095882  T
Q  213 cctactttttg 223  Q
    |||||||||||    
T  27095883 cctactttttg 27095893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 158 - 219
Target Start/End: Original strand, 11070729 - 11070789
Alignment:
Q  158 gtttcagttgggtgccaacctagttgggatgtttctggcgctccttgatgtctaacctactt 219  Q
    |||||||| | ||||||||||||||||||||| ||| | |||||||||||||| ||||||||    
T  11070729 gtttcagtggagtgccaacctagttgggatgtctct-gtgctccttgatgtctcacctactt 11070789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 220
Target Start/End: Original strand, 19247349 - 19247389
Alignment:
Q  180 gttgggatgtttctggcgctccttgatgtctaacctacttt 220  Q
    |||| ||||||||||||||||||||||| ||||||||||||    
T  19247349 gttgagatgtttctggcgctccttgatgcctaacctacttt 19247389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 219
Target Start/End: Original strand, 15081654 - 15081705
Alignment:
Q  168 ggtgccaacctagttgggatgtttctggcgctccttgatgtctaacctactt 219  Q
    |||| |||| |||||||||||||||| | | |||||||||||||||||||||    
T  15081654 ggtgtcaacttagttgggatgtttctagtgttccttgatgtctaacctactt 15081705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 192
Target Start/End: Complemental strand, 21709339 - 21709311
Alignment:
Q  164 gttgggtgccaacctagttgggatgtttc 192  Q
    |||||||||||||||||||||||||||||    
T  21709339 gttgggtgccaacctagttgggatgtttc 21709311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 192
Target Start/End: Original strand, 22459956 - 22459984
Alignment:
Q  164 gttgggtgccaacctagttgggatgtttc 192  Q
    |||||||||||||||||||||||||||||    
T  22459956 gttgggtgccaacctagttgggatgtttc 22459984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 163 - 223
Target Start/End: Original strand, 7324349 - 7324409
Alignment:
Q  163 agttgggtgccaacctagttgggatgtttctggcgctccttgatgtctaacctactttttg 223  Q
    |||||| ||||||||||||||||||||||||||| |||||||||| |||||||||||||||    
T  7324349 agttggatgccaacctagttgggatgtttctggcactccttgatgcctaacctactttttg 7324409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 164 - 219
Target Start/End: Complemental strand, 8612697 - 8612642
Alignment:
Q  164 gttgggtgccaacctagttgggatgtttctggcgctccttgatgtctaacctactt 219  Q
    |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||    
T  8612697 gttgggtgtcaacctagttgggatgtttctggcgctccttgatgcctaacctactt 8612642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 121
Target Start/End: Original strand, 7324198 - 7324293
Alignment:
Q  26 cctaactatcgttttccttagaatttatgttgtttctttccgttttatgcaactttttatgagggttttggcatagccccctctcttgtatatata 121  Q
    ||||||||||| ||||| ||| ||||  |||||||||||| ||||  |||| || ||| ||||||||||||| ||| |||| ||||| ||||||||    
T  7324198 cctaactatcgctttccctaggatttccgttgtttctttctgtttcctgcatctctttttgagggttttggcctagtcccccctcttttatatata 7324293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 158 - 195
Target Start/End: Original strand, 11070058 - 11070095
Alignment:
Q  158 gtttcagttgggtgccaacctagttgggatgtttctgg 195  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  11070058 gtttcagttggatgccaacctagttgggatgtttctgg 11070095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 215
Target Start/End: Original strand, 12130049 - 12130096
Alignment:
Q  167 gggtgccaacctagttgggatgtttctggcgctccttgatgtctaacct 215  Q
    |||||| |||||||||||||||| ||||| |||||||||||||||||||    
T  12130049 gggtgctaacctagttgggatgtctctgg-gctccttgatgtctaacct 12130096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 192
Target Start/End: Complemental strand, 22980603 - 22980575
Alignment:
Q  164 gttgggtgccaacctagttgggatgtttc 192  Q
    |||||||||||||||||||||||||||||    
T  22980603 gttgggtgccaacctagttgggatgtttc 22980575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 192
Target Start/End: Complemental strand, 22994254 - 22994226
Alignment:
Q  164 gttgggtgccaacctagttgggatgtttc 192  Q
    |||||||||||||||||||||||||||||    
T  22994254 gttgggtgccaacctagttgggatgtttc 22994226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 162 - 215
Target Start/End: Original strand, 24519886 - 24519938
Alignment:
Q  162 cagttgggtgccaacctagttgggatgtttctggcgctccttgatgtctaacct 215  Q
    |||| ||||||||||||||||||||||| ||||| |||||||||||||||||||    
T  24519886 cagtggggtgccaacctagttgggatgtctctgg-gctccttgatgtctaacct 24519938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 192
Target Start/End: Complemental strand, 32131312 - 32131284
Alignment:
Q  164 gttgggtgccaacctagttgggatgtttc 192  Q
    |||||||||||||||||||||||||||||    
T  32131312 gttgggtgccaacctagttgggatgtttc 32131284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 164 - 216
Target Start/End: Complemental strand, 45396998 - 45396947
Alignment:
Q  164 gttgggtgccaacctagttgggatgtttctggcgctccttgatgtctaaccta 216  Q
    |||||||||||||||||||||||| |||||||| |||||||||| ||||||||    
T  45396998 gttgggtgccaacctagttgggatatttctggc-ctccttgatgcctaaccta 45396947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 207
Target Start/End: Complemental strand, 10759001 - 10758957
Alignment:
Q  162 cagttgggtgccaacctagttgggatgtttctggcgctccttgatg 207  Q
    |||| ||||||||||||||||||||||| ||||| |||||||||||    
T  10759001 cagtggggtgccaacctagttgggatgtctctgg-gctccttgatg 10758957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 192
Target Start/End: Complemental strand, 21345518 - 21345490
Alignment:
Q  164 gttgggtgccaacctagttgggatgtttc 192  Q
    |||||||||||||||||||||||||||||    
T  21345518 gttgggtgccaacctagttgggatgtttc 21345490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 192
Target Start/End: Original strand, 39199303 - 39199331
Alignment:
Q  164 gttgggtgccaacctagttgggatgtttc 192  Q
    |||||||||||||||||||||||||||||    
T  39199303 gttgggtgccaacctagttgggatgtttc 39199331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 192
Target Start/End: Complemental strand, 47399258 - 47399230
Alignment:
Q  164 gttgggtgccaacctagttgggatgtttc 192  Q
    |||||||||||||||||||||||||||||    
T  47399258 gttgggtgccaacctagttgggatgtttc 47399230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 169 - 219
Target Start/End: Complemental strand, 11059367 - 11059318
Alignment:
Q  169 gtgccaacctagttgggatgtttctggcgctccttgatgtctaacctactt 219  Q
    ||||||||||||||||||||| ||||| |||||||||| ||||||||||||    
T  11059367 gtgccaacctagttgggatgtctctgg-gctccttgatatctaacctactt 11059318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 216
Target Start/End: Original strand, 10291143 - 10291194
Alignment:
Q  164 gttgggtgccaacctagttgggatgtttctggcgctccttgatgtctaaccta 216  Q
    |||||||||||||||||||| |||||||| ||| |||||| ||||||||||||    
T  10291143 gttgggtgccaacctagttgagatgtttccggc-ctccttaatgtctaaccta 10291194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 192
Target Start/End: Complemental strand, 18385349 - 18385321
Alignment:
Q  164 gttgggtgccaacctagttgggatgtttc 192  Q
    |||||||||||||||||||||||||||||    
T  18385349 gttgggtgccaacctagttgggatgtttc 18385321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 194
Target Start/End: Original strand, 42614540 - 42614572
Alignment:
Q  162 cagttgggtgccaacctagttgggatgtttctg 194  Q
    |||||||||||||||||||||||||||||||||    
T  42614540 cagttgggtgccaacctagttgggatgtttctg 42614572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0454 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0454
Description:

Target: scaffold0454; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 192
Target Start/End: Complemental strand, 13938 - 13910
Alignment:
Q  164 gttgggtgccaacctagttgggatgtttc 192  Q
    |||||||||||||||||||||||||||||    
T  13938 gttgggtgccaacctagttgggatgtttc 13910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0221 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0221
Description:

Target: scaffold0221; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 192
Target Start/End: Complemental strand, 10998 - 10970
Alignment:
Q  164 gttgggtgccaacctagttgggatgtttc 192  Q
    |||||||||||||||||||||||||||||    
T  10998 gttgggtgccaacctagttgggatgtttc 10970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 192
Target Start/End: Original strand, 22128276 - 22128304
Alignment:
Q  164 gttgggtgccaacctagttgggatgtttc 192  Q
    |||||||||||||||||||||||||||||    
T  22128276 gttgggtgccaacctagttgggatgtttc 22128304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 194
Target Start/End: Complemental strand, 24837138 - 24837102
Alignment:
Q  158 gtttcagttgggtgccaacctagttgggatgtttctg 194  Q
    ||||||||| |||||||||||||||| ||||||||||    
T  24837138 gtttcagttaggtgccaacctagttgagatgtttctg 24837102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 192
Target Start/End: Complemental strand, 16598796 - 16598768
Alignment:
Q  164 gttgggtgccaacctagttgggatgtttc 192  Q
    |||||||||||||||||||||||||||||    
T  16598796 gttgggtgccaacctagttgggatgtttc 16598768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University