View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3237_low_140 (Length: 236)

Name: NF3237_low_140
Description: NF3237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3237_low_140
NF3237_low_140
[»] scaffold0928 (2 HSPs)
scaffold0928 (21-118)||(2858-2955)
scaffold0928 (184-221)||(3020-3057)
[»] chr6 (2 HSPs)
chr6 (21-118)||(5312585-5312682)
chr6 (184-221)||(5312747-5312784)
[»] chr3 (5 HSPs)
chr3 (21-118)||(54753908-54754005)
chr3 (21-118)||(29516159-29516256)
chr3 (26-115)||(53345214-53345303)
chr3 (184-221)||(54754070-54754107)
chr3 (184-221)||(53345099-53345136)
[»] chr7 (2 HSPs)
chr7 (21-118)||(9147469-9147566)
chr7 (184-221)||(9147364-9147401)


Alignment Details
Target: scaffold0928 (Bit Score: 94; Significance: 5e-46; HSPs: 2)
Name: scaffold0928
Description:

Target: scaffold0928; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 21 - 118
Target Start/End: Original strand, 2858 - 2955
Alignment:
Q  21 aaatctgttgtaccactattttgttacatctctctttgattgggacatgagatgacagttactaccatggagaagataacaaaagcatttccctcctt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  2858 aaatctgttgtaccactattttgttacatctctctttgattgggacatgaggtgacagttactaccatggagaagataacaaaagcatttccctcctt 2955  T

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Target: scaffold0928; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 184 - 221
Target Start/End: Original strand, 3020 - 3057
Alignment:
Q  184 tagaatagttcttcgaaaaattcattcatcaatctctg 221  Q
    ||||||||||||||||||||||||||||||||||||||    
T  3020 tagaatagttcttcgaaaaattcattcatcaatctctg 3057  T

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Target: chr6 (Bit Score: 94; Significance: 5e-46; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 21 - 118
Target Start/End: Original strand, 5312585 - 5312682
Alignment:
Q  21 aaatctgttgtaccactattttgttacatctctctttgattgggacatgagatgacagttactaccatggagaagataacaaaagcatttccctcctt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  5312585 aaatctgttgtaccactattttgttacatctctctttgattgggacatgaggtgacagttactaccatggagaagataacaaaagcatttccctcctt 5312682  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 184 - 221
Target Start/End: Original strand, 5312747 - 5312784
Alignment:
Q  184 tagaatagttcttcgaaaaattcattcatcaatctctg 221  Q
    ||||||||||||||||||||||||||||||||||||||    
T  5312747 tagaatagttcttcgaaaaattcattcatcaatctctg 5312784  T

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Target: chr3 (Bit Score: 94; Significance: 5e-46; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 21 - 118
Target Start/End: Original strand, 54753908 - 54754005
Alignment:
Q  21 aaatctgttgtaccactattttgttacatctctctttgattgggacatgagatgacagttactaccatggagaagataacaaaagcatttccctcctt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  54753908 aaatctgttgtaccactattttgttacatctctctttgattgggacatgaggtgacagttactaccatggagaagataacaaaagcatttccctcctt 54754005  T

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Target: chr3; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 21 - 118
Target Start/End: Complemental strand, 29516256 - 29516159
Alignment:
Q  21 aaatctgttgtaccactattttgttacatctctctttgattgggacatgagatgacagttactaccatggagaagataacaaaagcatttccctcctt 118  Q
    |||||| |||||||||||||||||||||||||||  ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  29516256 aaatcttttgtaccactattttgttacatctctccatgattgggacatgaggtgacagttactaccatggagaagataacaaaagcatttccctcctt 29516159  T

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Target: chr3; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 26 - 115
Target Start/End: Complemental strand, 53345303 - 53345214
Alignment:
Q  26 tgttgtaccactattttgttacatctctctttgattgggacatgagatgacagttactaccatggagaagataacaaaagcatttccctc 115  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||    
T  53345303 tgttataccactattttgttacatctctctttgattgggacatgaggtgacagttactaccatggagaagataacaaaggcatttccctc 53345214  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 184 - 221
Target Start/End: Original strand, 54754070 - 54754107
Alignment:
Q  184 tagaatagttcttcgaaaaattcattcatcaatctctg 221  Q
    ||||||||||||||||||||||||||||||||||||||    
T  54754070 tagaatagttcttcgaaaaattcattcatcaatctctg 54754107  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 184 - 221
Target Start/End: Complemental strand, 53345136 - 53345099
Alignment:
Q  184 tagaatagttcttcgaaaaattcattcatcaatctctg 221  Q
    |||||||||||| |||||||||||||||||||||||||    
T  53345136 tagaatagttctccgaaaaattcattcatcaatctctg 53345099  T

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Target: chr7 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 21 - 118
Target Start/End: Complemental strand, 9147566 - 9147469
Alignment:
Q  21 aaatctgttgtaccactattttgttacatctctctttgattgggacatgagatgacagttactaccatggagaagataacaaaagcatttccctcctt 118  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  9147566 aaatctggtgtaccactattttgttacatctctctttgattgggacatgaggtgacagttactaccatcgagaagataacaaaagcatttccctcctt 9147469  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 184 - 221
Target Start/End: Complemental strand, 9147401 - 9147364
Alignment:
Q  184 tagaatagttcttcgaaaaattcattcatcaatctctg 221  Q
    ||||||||||||||||||||||||||||||||||||||    
T  9147401 tagaatagttcttcgaaaaattcattcatcaatctctg 9147364  T

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