View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3237_low_142 (Length: 231)
Name: NF3237_low_142
Description: NF3237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3237_low_142 |
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Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 15 - 217
Target Start/End: Original strand, 45969103 - 45969305
Alignment:
| Q |
15 |
aatatattgtccttgctcatattaaactatgtacaaacatatgttacttatgtatggtttattcgttaatatattgtaacatgatacaaggatatatgat |
114 |
Q |
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| T |
45969103 |
aatatattgtccttgctcatattaaactatgtacaaacatatgttacttatgtatggtttattcgttaatatattgtaacatgatacaaggatatatgat |
45969202 |
T |
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| Q |
115 |
ataacttttcttctcttttctattttaatagagttgggagaagacagtggactgctatagcccaggacaaggcttgatgcctgcaagtttcaaagttaaa |
214 |
Q |
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| T |
45969203 |
ataacttttcttctcttttctattttaatagagttgggagaagacagtggactgctatagcccaggacaaggcttgatgcctgcaagtttcaaagttaaa |
45969302 |
T |
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| Q |
215 |
act |
217 |
Q |
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| T |
45969303 |
act |
45969305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 144 - 212
Target Start/End: Complemental strand, 37654253 - 37654185
Alignment:
| Q |
144 |
agagttgggagaagacagtggactgctatagcccaggacaaggcttgatgcctgcaagtttcaaagtta |
212 |
Q |
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| T |
37654253 |
agagttgggagaaaactgtggactgctacagtccaggacagggtttgatgcctgctagtttcaaagtta |
37654185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 210
Target Start/End: Complemental strand, 50762010 - 50761944
Alignment:
| Q |
144 |
agagttgggagaagacagtggactgctatagcccaggacaaggcttgatgcctgcaagtttcaaagt |
210 |
Q |
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| T |
50762010 |
agagttgggagaagaccgttgattgctacagcccagggcaagggttgatgccagcgagcttcaaagt |
50761944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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