View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3237_low_152 (Length: 206)
Name: NF3237_low_152
Description: NF3237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3237_low_152 |
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Alignment Details
Target: chr4 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 107 - 186
Target Start/End: Original strand, 55907344 - 55907423
Alignment:
| Q |
107 |
cacaactgtgacagctgtaaataattgttatttatctgataattgttgggaatatgtcttcacatttctgatcaacgaca |
186 |
Q |
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| T |
55907344 |
cacaactgtgacagctgtaaataattgttatttatctgataattgttgggaatatgtcttcacatttctgatcaacgaca |
55907423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 55907245 - 55907310
Alignment:
| Q |
17 |
cacagaaagtaaaagaagaagaagaacaacaatgaggttgagtaaactggttgctttcagaaacac |
82 |
Q |
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| T |
55907245 |
cacagaaagtaaaagaagaagaacaacaacaatgaggttgagtaaactggttgctttcagaaacac |
55907310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 72; Significance: 6e-33; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 107 - 186
Target Start/End: Original strand, 1036086 - 1036165
Alignment:
| Q |
107 |
cacaactgtgacagctgtaaataattgttatttatctgataattgttgggaatatgtcttcacatttctgatcaacgaca |
186 |
Q |
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| T |
1036086 |
cacaactgtgacagctgtaaataattgttatttatctgataattgttcggaatatgtcttcacatttctgatcaatgaca |
1036165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 1035987 - 1036052
Alignment:
| Q |
17 |
cacagaaagtaaaagaagaagaagaacaacaatgaggttgagtaaactggttgctttcagaaacac |
82 |
Q |
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| T |
1035987 |
cacagaaagtaaaagaagaagaagaacaacaatgaggttgaataaactggttgctttcagaaacac |
1036052 |
T |
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