View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3237_low_153 (Length: 205)
Name: NF3237_low_153
Description: NF3237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3237_low_153 |
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Alignment Details
Target: chr2 (Bit Score: 172; Significance: 1e-92; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 12 - 187
Target Start/End: Complemental strand, 44489408 - 44489233
Alignment:
| Q |
12 |
gaagaatataatacataactagttaagtaaagtatttttactaaaatcattcaagtattttaaaattgtgaatgagtacataaaagaaccttagagccaa |
111 |
Q |
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| T |
44489408 |
gaagaaaataatacataactagttaagtaaagtatttttactaaaatcattcaagtattttaaaattgtgaatgagtacataaaagaaccttagagccaa |
44489309 |
T |
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| Q |
112 |
gatcatctccaaataaaagactgatttgatctgttgtatatgctggagaattgcagcttgtctttatggtgattag |
187 |
Q |
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| T |
44489308 |
gatcatctccaaataaaagactgatttgatctgttgtatatgctggagaattgcagcttgtctttatggtgattag |
44489233 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 93 - 172
Target Start/End: Complemental strand, 44495424 - 44495345
Alignment:
| Q |
93 |
aaaagaaccttagagccaagatcatctccaaataaaagactgatttgatctgttgtatatgctggagaattgcagcttgt |
172 |
Q |
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|||||||||| ||||||| || ||||||||||| ||| ||||||| ||||||||||||| ||||||| ||||||||| |
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| T |
44495424 |
aaaagaacctcagagccatgagcatctccaaatgaaatactgattctatctgttgtatattgtggagaacggcagcttgt |
44495345 |
T |
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