View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3237_low_17 (Length: 552)
Name: NF3237_low_17
Description: NF3237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3237_low_17 |
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| [»] scaffold1185 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 409; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 1 - 536
Target Start/End: Complemental strand, 43149394 - 43148856
Alignment:
| Q |
1 |
tgtgagagtgtctgactgtgttttctaatatatttttggctttttcnnnnnnnnnn--ctttaatttagttttctttttaacaaactaaaatgagatata |
98 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |
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| T |
43149394 |
tgtgagagtgtctgactgtgttttctaatatatttttggctttttcaaaaaaaaaaaactttaatttagtttt-tttttaacaaactaaaatgagatata |
43149296 |
T |
|
| Q |
99 |
ttataagtaaaattaatttagttaaactttaatttagttatctttggaacattgttagactttaatttaatcagactgtatatcactaatgcatattaat |
198 |
Q |
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|||||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43149295 |
ttataaataaagttaatttagttaaactttaatttagttatctttggtacattgttagactttaatttaatcagactgtatatcactaatgcatattaat |
43149196 |
T |
|
| Q |
199 |
tcaaacttttggacttcattttatttcaagaaacaagtacatattttttaaagaattctccttgaataatatctacgaacacaataactattgaactatc |
298 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43149195 |
tcaaacttttgtacttcattttatttcaagaaacaagtacatattttttaaagaattctccttgaataatatctacgaacacaataactattgaactatc |
43149096 |
T |
|
| Q |
299 |
cgtttaccacttgagatcattgattttgaaagtatacttcaagatcatctttnnnnnnnncattgctatatgtactctacataatattattattttttaa |
398 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
43149095 |
cgtttaccacttgagatcattgattttgaaagtatacttcaagatcatctttaaaaaaaacattgctatatgtactctacataatattattattttttaa |
43148996 |
T |
|
| Q |
399 |
tctctcgatctaggtacaaatattataagccagataaaattacaagttcttggtcccctttgctgatgtagtagatg--tctgtctttcattacnnnnnn |
496 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
43148995 |
tctctcgatctaggtacaaatattataagccagataaaattacaagttcttggtcccctttgctgatgtagtagatgtctctgtctttcattacaaaaaa |
43148896 |
T |
|
| Q |
497 |
nnntatgtctgtcttttagcttaatttttccttgtcctat |
536 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||| |
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| T |
43148895 |
aaatatgtctgtcttttagcttaatttttccttgttctat |
43148856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 68 - 103
Target Start/End: Complemental strand, 24662844 - 24662809
Alignment:
| Q |
68 |
ttttctttttaacaaactaaaatgagatatattata |
103 |
Q |
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|||| ||||||||||||||||||||||||||||||| |
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| T |
24662844 |
ttttttttttaacaaactaaaatgagatatattata |
24662809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 73 - 118
Target Start/End: Original strand, 12691751 - 12691796
Alignment:
| Q |
73 |
tttttaacaaactaaaatgagatatattataagtaaaattaattta |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| ||||| |
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| T |
12691751 |
tttttaacaaactaaaatgagatatattataaacaaaattgattta |
12691796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 68 - 99
Target Start/End: Original strand, 13094720 - 13094751
Alignment:
| Q |
68 |
ttttctttttaacaaactaaaatgagatatat |
99 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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|
| T |
13094720 |
ttttctttttaacaaactaaaatgagatatat |
13094751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 68 - 104
Target Start/End: Complemental strand, 26159954 - 26159918
Alignment:
| Q |
68 |
ttttctttttaacaaactaaaatgagatatattataa |
104 |
Q |
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|||| |||||||||||||||||||||||||||||||| |
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| T |
26159954 |
ttttttttttaacaaactaaaatgagatatattataa |
26159918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1185 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold1185
Description:
Target: scaffold1185; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 73 - 104
Target Start/End: Complemental strand, 2310 - 2279
Alignment:
| Q |
73 |
tttttaacaaactaaaatgagatatattataa |
104 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
2310 |
tttttaacaaactaaaatgagatatattataa |
2279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 73 - 103
Target Start/End: Complemental strand, 11768690 - 11768660
Alignment:
| Q |
73 |
tttttaacaaactaaaatgagatatattata |
103 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
11768690 |
tttttaacaaactaaaatgagatatattata |
11768660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 68 - 118
Target Start/End: Original strand, 43799404 - 43799454
Alignment:
| Q |
68 |
ttttctttttaacaaactaaaatgagatatattataagtaaaattaattta |
118 |
Q |
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|||| |||||||||||||||||||| ||||||||||| | |||||||||| |
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| T |
43799404 |
ttttttttttaacaaactaaaatgaaatatattataaacacaattaattta |
43799454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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