View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3237_low_19 (Length: 543)
Name: NF3237_low_19
Description: NF3237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3237_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 478; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 20 - 521
Target Start/End: Original strand, 6967890 - 6968391
Alignment:
| Q |
20 |
gtaggttcctttccggttctgtcacccttaacaatatctgccaaggactcaatttctgccatttcttcttgtgttagtttaacagataaagcaccaatgt |
119 |
Q |
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|||||||||||||||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6967890 |
gtaggttcctttccggttctgtcaccctcaacaagatctgccaaggattcaatttctgccatttcttcttgtgttagtttaacagataaagcaccaatgt |
6967989 |
T |
|
| Q |
120 |
tttgattaaagttctctattttggtggttccaggtatcgggcacacgtcgtttccttggtgatgaagccatgccaatgcgagctgagatggagtacatcc |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
6967990 |
tttgattaaagttctctattttggtggttccaggtatcgggcacacgtcgtttccttggtgatgaagccatgccaatgcaagctgagatggagtacatcc |
6968089 |
T |
|
| Q |
220 |
cttcttagcagccagttcattaaccctctcaaatatagtctgattttgctgcaggttttcaggttgaaatctcggcatatactgcagcacatatacacaa |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6968090 |
cttcttagcagccagttcattaaccctctcaaatatagtctgattttgctgcaggttttcaggttgaaatctcggcatatactgcagcacatatacacaa |
6968189 |
T |
|
| Q |
320 |
atagaagattatatttaggcaaccgtgatgaacattcaatgagataataaagatatttccctgatgttacaaggtgtcagcaaggaaaagtaacacaact |
419 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6968190 |
atagaagattatatttaggcaacagtgatgaacattcaatgagataataaagatatttccctgatgttacaaggtgtcagcaaggaaaagtaacacaact |
6968289 |
T |
|
| Q |
420 |
ctatgaatcaatgacacatatacggacacgacattgatactaacacaaagttagtgataataattttagaaagtaataaaatcagagtcgtgtcagacat |
519 |
Q |
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| T |
6968290 |
ctatgaatcaatgacacatatacggacacgacattgatactaacacaaagtgagtgataataattttagaaagtaataaaatcagagtcgtgtcagacat |
6968389 |
T |
|
| Q |
520 |
tg |
521 |
Q |
| |
|
|| |
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|
| T |
6968390 |
tg |
6968391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 42 - 318
Target Start/End: Complemental strand, 6960523 - 6960248
Alignment:
| Q |
42 |
cacccttaacaatatctgccaaggactcaatttctgccatttcttcttgtgttagtttaacagataaagcaccaatgttttgattaaagttctctatttt |
141 |
Q |
| |
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||||||||||| |||||| || ||||||| |||||| ||| ||||| |||||||||| ||||| ||||| ||||||||||||||||||||||| ||||| |
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| T |
6960523 |
cacccttaacagcatctgctaaagactcaagttctgctatt-cttctggtgttagtttcacagacaaagctccaatgttttgattaaagttctcaatttt |
6960425 |
T |
|
| Q |
142 |
ggtggttccaggtatcgggcacacgtcgtttccttggtgatgaagccatgccaatgcgagctgagatggagtacatcccttcttagcagccagttcatta |
241 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| || | ||| |||||||||||||||||||||||||| |||||||||||||| |
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| T |
6960424 |
ggtggttccaggtatcgggcacacgtcgtttccttggtgatgaagccaggctagtgcaagctgagatggagtacatcccttctttacagccagttcatta |
6960325 |
T |
|
| Q |
242 |
accctctcaaatatagtctgattttgctgcaggttttcaggttgaaatctcggcatatactgcagcacatatacaca |
318 |
Q |
| |
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||| | ||||||||||||||||| |||||||||||||||||||||||||| |||| || ||||| || || |||||| |
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| T |
6960324 |
accttatcaaatatagtctgattctgctgcaggttttcaggttgaaatctaggcaaatgctgcaacatatttacaca |
6960248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 42 - 305
Target Start/End: Original strand, 6917576 - 6917839
Alignment:
| Q |
42 |
cacccttaacaatatctgccaaggactcaatttctgccatttcttcttgtgttagtttaacagataaagcaccaatgttttgattaaagttctctatttt |
141 |
Q |
| |
|
||||||||||| |||||| || ||||||| |||| |||||||||||||||||||||| ||||||| |||||| |||||||||||||||||||| ||||| |
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| T |
6917576 |
cacccttaacagaatctgctaaagactcaagttctaccatttcttcttgtgttagtttcacagatagagcaccgatgttttgattaaagttctcaatttt |
6917675 |
T |
|
| Q |
142 |
ggtggttccaggtatcgggcacacgtcgtttccttggtgatgaagccatgccaatgcgagctgagatggagtacatcccttcttagcagccagttcatta |
241 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| | |||||||||||| |
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| T |
6917676 |
ggtggttccaggtatcgggcacacgtcgtttccttggtgatgaagccatgccaatgcaagctgggatggagtacatcccttctttgtggccagttcatta |
6917775 |
T |
|
| Q |
242 |
accctctcaaatatagtctgattttgctgcaggttttcaggttgaaatctcggcatatactgca |
305 |
Q |
| |
|
|| | ||||| || |||||||| || |||||||| |||||||||||||| |||| || ||||| |
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| T |
6917776 |
actttgtcaaaaatggtctgattctgttgcaggttctcaggttgaaatctaggcaaatcctgca |
6917839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 42 - 290
Target Start/End: Original strand, 6920292 - 6920540
Alignment:
| Q |
42 |
cacccttaacaatatctgccaaggactcaatttctgccatttcttcttgtgttagtttaacagataaagcaccaatgttttgattaaagttctctatttt |
141 |
Q |
| |
|
||||||||||| |||||| || ||||||| |||| |||||||||||||||||||||| ||||||| |||||| ||||||||||| |||||||| ||||| |
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|
| T |
6920292 |
cacccttaacagcatctgctaaagactcaagttctaccatttcttcttgtgttagtttcacagatagagcaccgatgttttgattcaagttctcaatttt |
6920391 |
T |
|
| Q |
142 |
ggtggttccaggtatcgggcacacgtcgtttccttggtgatgaagccatgccaatgcgagctgagatggagtacatcccttcttagcagccagttcatta |
241 |
Q |
| |
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||||||||||||||| |||||||| || |||||||||||||||||||| || | ||| ||||||| |||||||||||||||||| | ||||| ||||||| |
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| T |
6920392 |
ggtggttccaggtattgggcacacatcatttccttggtgatgaagccaggctagtgcaagctgaggtggagtacatcccttctttgtagccaattcatta |
6920491 |
T |
|
| Q |
242 |
accctctcaaatatagtctgattttgctgcaggttttcaggttgaaatc |
290 |
Q |
| |
|
|| | ||||||||||||||||| |||||||||||||||| |||||||| |
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|
| T |
6920492 |
actttgtcaaatatagtctgattctgctgcaggttttcagtttgaaatc |
6920540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 42 - 290
Target Start/End: Complemental strand, 6957920 - 6957672
Alignment:
| Q |
42 |
cacccttaacaatatctgccaaggactcaatttctgccatttcttcttgtgttagtttaacagataaagcaccaatgttttgattaaagttctctatttt |
141 |
Q |
| |
|
||||||||||| |||||| || ||||||| |||| |||||||||||||||||||||| ||||||| |||||| ||||||||||| |||||||| ||||| |
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| T |
6957920 |
cacccttaacagcatctgctaaagactcaagttctaccatttcttcttgtgttagtttcacagatagagcaccgatgttttgattcaagttctcaatttt |
6957821 |
T |
|
| Q |
142 |
ggtggttccaggtatcgggcacacgtcgtttccttggtgatgaagccatgccaatgcgagctgagatggagtacatcccttcttagcagccagttcatta |
241 |
Q |
| |
|
||||||||||||||| |||||||| || |||||||||||||||||||| || | ||| ||||||| |||||||||||||||||| | ||||| ||||||| |
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|
| T |
6957820 |
ggtggttccaggtattgggcacacatcatttccttggtgatgaagccaggctagtgcaagctgaggtggagtacatcccttctttgtagccaattcatta |
6957721 |
T |
|
| Q |
242 |
accctctcaaatatagtctgattttgctgcaggttttcaggttgaaatc |
290 |
Q |
| |
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|| | ||||||||||||||||| |||||||||||||||| |||||||| |
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|
| T |
6957720 |
actttgtcaaatatagtctgattctgctgcaggttttcagtttgaaatc |
6957672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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