View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3237_low_24 (Length: 502)

Name: NF3237_low_24
Description: NF3237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3237_low_24
NF3237_low_24
[»] chr2 (11 HSPs)
chr2 (19-294)||(9322469-9322744)
chr2 (293-454)||(9322779-9322940)
chr2 (312-454)||(11424181-11424323)
chr2 (63-294)||(11424415-11424639)
chr2 (115-230)||(9330583-9330698)
chr2 (328-454)||(9330826-9330952)
chr2 (348-450)||(32304267-32304369)
chr2 (354-426)||(11425636-11425708)
chr2 (139-192)||(11425916-11425969)
chr2 (257-294)||(9330754-9330791)
chr2 (241-294)||(11425803-11425856)
[»] chr4 (1 HSPs)
chr4 (450-502)||(34137584-34137639)


Alignment Details
Target: chr2 (Bit Score: 251; Significance: 1e-139; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 19 - 294
Target Start/End: Original strand, 9322469 - 9322744
Alignment:
Q  19 aacatgcacttaatgttctcataattgcagcaaacaattatataaaatgaaccaaaaatagaactgctaaaccattcctctaccaacttgtacaatcttt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9322469 aacatgcacttaatgttctcataattgcagcaaacaattatataaaatgaaccaaaaatagaactgctaaaccattcctctaccaacttgtacaatcttt 9322568  T
Q  119 catctcttgtacttgcaaacaaatgatcatttcatgacacattatcattttaagtcaaaattaaatggtcatattcaaccatgtgctagccatgaatgtg 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9322569 catctcttgtacttgcaaacaaatgatcatttcatgacacattatcattttaagtcaaaattaaatggtcatattcaaccatgtgctagccatgaatgtg 9322668  T
Q  219 ttgtacaccaagnnnnnnntggttaatacaaacatgttaaaaagccatgctctaaacaaatatgggatggtaccaa 294  Q
    || |||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9322669 ttttacaccaagaaaaaaatggttaatacaaacatgttaaaaagccatgctctaaacaaatatgggatggtaccaa 9322744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 293 - 454
Target Start/End: Original strand, 9322779 - 9322940
Alignment:
Q  293 aagtagttagcatgagccaccaggcctttaagaaaccgatccaatacatcgaatcactattcctaagacctcattcttttccttctctacaactggattt 392  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9322779 aagtagttagcatgagccaccaggcctttaagaaaccgatccaatacatcgaatcactattcctaagacctcattcttttccttctctacaactggattt 9322878  T
Q  393 cccatttctaacatcaaagttgcatcgaaacattcggagcctcgaccttctgctactcgcaa 454  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9322879 cccatttctaacatcaaagttgcatcgaaacattcggagcctcgaccttctgctactcgcaa 9322940  T

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Target: chr2; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 312 - 454
Target Start/End: Complemental strand, 11424323 - 11424181
Alignment:
Q  312 ccaggcctttaagaaaccgatccaatacatcgaatcactattcctaagacctcattcttttccttctctacaactggatttcccatttctaacatcaaag 411  Q
    |||||||||| ||||||||||| ||||||||||||  ||||||||| |||||| ||| || |||| |||||||||||||||||||||||  |||||||||    
T  11424323 ccaggcctttcagaaaccgatcgaatacatcgaattgctattcctaggacctccttcattcccttttctacaactggatttcccatttccgacatcaaag 11424224  T
Q  412 ttgcatcgaaacattcggagcctcgaccttctgctactcgcaa 454  Q
    |||||||||||||||| ||||||||||||||||||||||||||    
T  11424223 ttgcatcgaaacattccgagcctcgaccttctgctactcgcaa 11424181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 63 - 294
Target Start/End: Complemental strand, 11424639 - 11424415
Alignment:
Q  63 aaatgaaccaaaaatagaactgctaaaccattcctctaccaacttgtacaatctttcatctcttgtacttgcaaacaaatgatcatttcatgacacatta 162  Q
    |||| ||||| ||||||||||||||||||||||| || |||| |||||||| | |||||||||||  ||   |||||||||||||||||||||||||||     
T  11424639 aaattaaccacaaatagaactgctaaaccattccactgccaaattgtacaa-cattcatctcttg--ct---aaacaaatgatcatttcatgacacattc 11424546  T
Q  163 tcattttaagtcaaaattaaatggtcatattcaaccatgtgctagccatgaatgtgttgtacaccaagnnnnnnntggttaatacaaacatgttaaaaag 262  Q
     ||||||||| |||||| |||||||||||| ||| ||||| ||| ||||| || || | ||||  ||        |||||||||||||||||||||||||    
T  11424545 ccattttaagacaaaatcaaatggtcatatccaatcatgtactacccatgtatctgctttacattaa-caaaaattggttaatacaaacatgttaaaaag 11424447  T
Q  263 ccatgctctaaacaaatatgggatggtaccaa 294  Q
    ||||||||||||||||||||||||| ||||||    
T  11424446 ccatgctctaaacaaatatgggatgataccaa 11424415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 115 - 230
Target Start/End: Original strand, 9330583 - 9330698
Alignment:
Q  115 ctttcatctcttgtacttgcaaacaaatgatcatttcatgacacattatcattttaagtcaaaattaaatggtcatattcaaccatgtgctagccatgaa 214  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||| ||| |    
T  9330583 ctttcatctcttgtacttgcaaacaaatgaacatttcatgacacattaccattttaagacaaaattaaatggacatattcaaccatgtgctagcaatgta 9330682  T
Q  215 tgtgttgtacaccaag 230  Q
    |||| | |||||||||    
T  9330683 tgtgctttacaccaag 9330698  T

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Target: chr2; HSP #6
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 328 - 454
Target Start/End: Original strand, 9330826 - 9330952
Alignment:
Q  328 ccgatccaatacatcgaatcactattcctaagacctcattcttttccttctctacaactggatttcccatttctaacatcaaagttgcatcgaaacattc 427  Q
    |||||| |||| |||||||| ||||||||| |||||||||| || |||| ||||||| | ||||||||||||||||| |||||| |||||||||||||||    
T  9330826 ccgatcaaatatatcgaatcgctattcctaggacctcattcattcccttttctacaattagatttcccatttctaacgtcaaagctgcatcgaaacattc 9330925  T
Q  428 ggagcctcgaccttctgctactcgcaa 454  Q
    |||||||||||||| ||||||||||||    
T  9330926 ggagcctcgaccttatgctactcgcaa 9330952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 348 - 450
Target Start/End: Original strand, 32304267 - 32304369
Alignment:
Q  348 actattcctaagacctcattcttttccttctctacaactggatttcccatttctaacatcaaagttgcatcgaaacattcggagcctcgaccttctgcta 447  Q
    |||||||||| |||||| ||| || |||| ||||||||| |||||||||||||| |||||||||||||||| |||||||| ||| |||||||||||||||    
T  32304267 actattcctatgacctccttcattcccttttctacaactagatttcccatttctgacatcaaagttgcatcaaaacattccgagactcgaccttctgcta 32304366  T
Q  448 ctc 450  Q
    |||    
T  32304367 ctc 32304369  T

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Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 354 - 426
Target Start/End: Complemental strand, 11425708 - 11425636
Alignment:
Q  354 cctaagacctcattcttttccttctctacaactggatttcccatttctaacatcaaagttgcatcgaaacatt 426  Q
    |||| |||||| ||| || |||| |||||||||||||| |||||||||||||||||||| ||||| |||||||    
T  11425708 cctaggacctccttcattcccttttctacaactggattccccatttctaacatcaaagtagcatcaaaacatt 11425636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 139 - 192
Target Start/End: Complemental strand, 11425969 - 11425916
Alignment:
Q  139 aaatgatcatttcatgacacattatcattttaagtcaaaattaaatggtcatat 192  Q
    |||||||||||||||||||||||  ||||||||| |||||| ||||||||||||    
T  11425969 aaatgatcatttcatgacacattcccattttaagacaaaatcaaatggtcatat 11425916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 257 - 294
Target Start/End: Original strand, 9330754 - 9330791
Alignment:
Q  257 aaaaagccatgctctaaacaaatatgggatggtaccaa 294  Q
    |||||| |||||||||||||||||||||||||||||||    
T  9330754 aaaaagtcatgctctaaacaaatatgggatggtaccaa 9330791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 294
Target Start/End: Complemental strand, 11425856 - 11425803
Alignment:
Q  241 ttaatacaaacatgttaaaaagccatgctctaaacaaatatgggatggtaccaa 294  Q
    |||||||| |||| |||||||||||||| ||||||||||| | |||| ||||||    
T  11425856 ttaatacagacatcttaaaaagccatgccctaaacaaatacgagatgataccaa 11425803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 450 - 502
Target Start/End: Complemental strand, 34137639 - 34137584
Alignment:
Q  450 cgcaagaaaccaaaccag---caaacagaaaaacatcatcatgggagaagtagacc 502  Q
    ||||||||||||||| ||   |||||||||||||||||||||||||||||||||||    
T  34137639 cgcaagaaaccaaactagtagcaaacagaaaaacatcatcatgggagaagtagacc 34137584  T

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