View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3237_low_26 (Length: 492)

Name: NF3237_low_26
Description: NF3237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3237_low_26
NF3237_low_26
[»] chr1 (1 HSPs)
chr1 (1-475)||(43314533-43315030)


Alignment Details
Target: chr1 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 475
Target Start/End: Original strand, 43314533 - 43315030
Alignment:
Q  1 tataggatagaaaaggtttggaacttgaaacaacttaaagatgaagtacttgtcaaaatagaagttaaaaatgaagtgaaaactacnnnnnnnnnatttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||            ||||    
T  43314533 tataggatagaaaaggtttggaacttgaaacaacttaaagatgaaatatttgtcaaaatagaagttaaaaatgaagtgaaaacttttttttttttttttt 43314632  T
Q  101 --acgaagtttattctatgttaaagttatttacttgtcttacagaaatgatatannnnnnnctttgtaaaaagtttagttgaattgaactttaaaaattt 198  Q
      ||||||||||||||||||||||||||||||||||||||||||||||||||||        | |||||||||||||||||||||||||||||||||||     
T  43314633 ttacgaagtttattctatgttaaagttatttacttgtcttacagaaatgatatatttttttgtctgtaaaaagtttagttgaattgaactttaaaaattc 43314732  T
Q  199 actaaatttatagtaagcttcaagattcagcgaacgttattatatgtatttacttgcaaattatc-aattaaaaagtcttcacataaaaagtttgacaa- 296  Q
    ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||     
T  43314733 actaagtttataataagcttcaagattcagcgaacgttattatatgtatttacttgcaaattatcaaattaaaaagtcttcacataaaaagtttgacaat 43314832  T
Q  297 aatt-----------------tatatggtgttggtaaatataagattaattatggttagtgattgattaactagtataacaatatatcacaactcatcac 379  Q
    ||||                 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43314833 aatttatatggtgttgttaaatatatggtgttgttaaatataagattaattatggttagtgattgattaactagtataacaatatatcacaactcatcac 43314932  T
Q  380 taattcatttaattaatataaataacaa--nnnnnnngttattaatcacaatcttcaattgcatgtttgagctaaatcatggttaacaaatattatgt 475  Q
    ||||||||||||||||||||||||||||         |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  43314933 taattcatttaattaatataaataacaatttttttttgttattaatcacaatcttcaattgtatgtttgagctaaatcatggttaacaaatattatgt 43315030  T

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