View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3237_low_34 (Length: 458)

Name: NF3237_low_34
Description: NF3237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3237_low_34
NF3237_low_34
[»] chr8 (4 HSPs)
chr8 (141-441)||(27324536-27324832)
chr8 (286-433)||(12587430-12587577)
chr8 (1-101)||(27324868-27324973)
chr8 (65-101)||(12587768-12587804)
[»] chr6 (3 HSPs)
chr6 (286-432)||(6900579-6900725)
chr6 (1-61)||(28916174-28916234)
chr6 (65-101)||(6900350-6900386)
[»] chr3 (1 HSPs)
chr3 (290-432)||(49602978-49603120)
[»] chr7 (1 HSPs)
chr7 (290-432)||(22970057-22970200)
[»] chr1 (1 HSPs)
chr1 (290-432)||(21880425-21880568)
[»] chr2 (1 HSPs)
chr2 (4-61)||(41596586-41596643)


Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 141 - 441
Target Start/End: Complemental strand, 27324832 - 27324536
Alignment:
Q  141 ctgctaataacacccacccattattgatttagtaacatatcaaacacacccacccagcaacccaactgtccaagtccaattggctaacacaattttgatc 240  Q
    |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||  |||||||||||||||||||||||||    
T  27324832 ctgctaataacacccacccactattgctttagtaacatatcaaacacacccacccagcaacccaactgcccaaacccaattggctaacacaattttgatc 27324733  T
Q  241 caccaacactcgtcccgccatcacaaacaattcacaattatagaacacgctttctttctttctttctcacggtgaacaaacaaactccctctctgtttca 340  Q
    ||||||||| ||||| ||| ||    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27324732 caccaacacacgtcctgccgtc----acaattcacaattatagaacacgttttctttctttctttctcacggtgaacaaacaaactccctctctgtttca 27324637  T
Q  341 accacatnnnnnnntcaaccacttccacatccgtgtttcaaaacaaaacttcctcctctttgtttcttgtgtctctaatcttcttattcctttactattt 440  Q
    |||||||       |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  27324636 accacataaaaaaatcaaccacttccacatccttgtttcaaaacaaaacttcctcctctttgttacttgtgtctctaatcttcttattcctttactattt 27324537  T

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Target: chr8; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 286 - 433
Target Start/End: Complemental strand, 12587577 - 12587430
Alignment:
Q  286 cacgctttctttctttctttctcacggtgaacaaacaaactccctctctgtttcaaccacatnnnnnnntcaaccacttccacatccgtgtttcaaaaca 385  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||       |||||||| ||||||||| ||||| |||| |    
T  12587577 cacggtttctttctttctttctcacagtgaacaaacaaactccctctctgtttcaaccacatcaaaaaatcaaccacatccacatccttgttttaaaata 12587478  T
Q  386 aaacttcctcctctttgtttcttgtgtctctaatcttcttattccttt 433  Q
    |||||||||| || ||||||||||||||||||||||||| ||||||||    
T  12587477 aaacttcctcttccttgtttcttgtgtctctaatcttctcattccttt 12587430  T

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Target: chr8; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 27324973 - 27324868
Alignment:
Q  1 taggttaccatggtcatcgaatttgcaggttgtttcgaatccaacaaaatttggatccataaca-----ggagccactcatatgattgtgggggctcctg 95  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||     ||||||||||| ||||||||||||||||||     
T  27324973 taggttaacatggtcatcgaatttgcaggttgtttcgaatccaacaaaatttggatccatagcaggggcggagccactcacatgattgtgggggctccta 27324874  T
Q  96 catgca 101  Q
    ||||||    
T  27324873 catgca 27324868  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 101
Target Start/End: Complemental strand, 12587804 - 12587768
Alignment:
Q  65 ggagccactcatatgattgtgggggctcctgcatgca 101  Q
    ||||||||||| |||||||||||||||||||| ||||    
T  12587804 ggagccactcacatgattgtgggggctcctgcctgca 12587768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 82; Significance: 1e-38; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 286 - 432
Target Start/End: Original strand, 6900579 - 6900725
Alignment:
Q  286 cacgctttctttctttctttctcacggtgaacaaacaaactccctctctgtttcaaccacatnnnnnnntcaaccacttccacatccgtgtttcaaaaca 385  Q
    |||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||       |||||||  ||||||||| ||||| |||| |    
T  6900579 cacgctttctttctttctttcttacagtgaacaaacaaacaccctctctgtttcaaccacatcaaaaaatcaaccatatccacatccttgttttaaaata 6900678  T
Q  386 aaacttcctcctctttgtttcttgtgtctctaatcttcttattcctt 432  Q
    |||||||||| || ||||||||||||||||||||||||| |||||||    
T  6900679 aaacttcctcttccttgtttcttgtgtctctaatcttctcattcctt 6900725  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 28916234 - 28916174
Alignment:
Q  1 taggttaccatggtcatcgaatttgcaggttgtttcgaatccaacaaaatttggatccata 61  Q
    ||||||||| ||||||||||||||| |||| ||||||||  |||||||||| |||||||||    
T  28916234 taggttaccttggtcatcgaatttgtaggtggtttcgaaatcaacaaaattcggatccata 28916174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 6900350 - 6900386
Alignment:
Q  65 ggagccactcatatgattgtgggggctcctgcatgca 101  Q
    ||||||||||| |||||||||||||||||||| ||||    
T  6900350 ggagccactcacatgattgtgggggctcctgcctgca 6900386  T

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Target: chr3 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 290 - 432
Target Start/End: Complemental strand, 49603120 - 49602978
Alignment:
Q  290 ctttctttctttctttctcacggtgaacaaacaaactccctctctgtttcaaccacatnnnnnnntcaaccacttccacatccgtgtttcaaaacaaaac 389  Q
    |||||||||| |||||||||| ||||||||||||||||||||||||||||||| ||||       |||||||| ||||||||| ||||| |||| |||||    
T  49603120 ctttctttctctctttctcacagtgaacaaacaaactccctctctgtttcaacaacatcaaaaaatcaaccacatccacatccttgttttaaaataaaac 49603021  T
Q  390 ttcctcctctttgtttcttgtgtctctaatcttcttattcctt 432  Q
    |||||| || ||||||||||||||||||||||||| |||||||    
T  49603020 ttcctcttccttgtttcttgtgtctctaatcttctcattcctt 49602978  T

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Target: chr7 (Bit Score: 79; Significance: 9e-37; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 290 - 432
Target Start/End: Original strand, 22970057 - 22970200
Alignment:
Q  290 ctttctttctttctttctcacggtgaacaaacaaactccctctctgtttcaaccacat-nnnnnnntcaaccacttccacatccgtgtttcaaaacaaaa 388  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||        |||||||| ||||||||| ||||| |||| ||||    
T  22970057 ctttctttctttctttctcacagtgaacaaacaaactccctctctgtttcaaccacatcaaaaaaatcaaccacatccacatccttgttttaaaataaaa 22970156  T
Q  389 cttcctcctctttgtttcttgtgtctctaatcttcttattcctt 432  Q
    ||||||| || ||||||||| ||||||||||||||| |||||||    
T  22970157 cttcctcttccttgtttcttatgtctctaatcttctcattcctt 22970200  T

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Target: chr1 (Bit Score: 79; Significance: 9e-37; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 290 - 432
Target Start/End: Complemental strand, 21880568 - 21880425
Alignment:
Q  290 ctttctttctttctttctcacggtgaacaaacaaactccctctctgtttcaaccacat-nnnnnnntcaaccacttccacatccgtgtttcaaaacaaaa 388  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||        |||||||| ||||||||| ||||| |||| ||||    
T  21880568 ctttctttctttctttctcacagtgaacaaacaaactccctctctgtttcaaccacatcaaaaaaatcaaccacatccacatccttgttttaaaataaaa 21880469  T
Q  389 cttcctcctctttgtttcttgtgtctctaatcttcttattcctt 432  Q
    ||||||| || ||||||||| ||||||||||||||| |||||||    
T  21880468 cttcctcttccttgtttcttatgtctctaatcttctcattcctt 21880425  T

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Target: chr2 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 4 - 61
Target Start/End: Complemental strand, 41596643 - 41596586
Alignment:
Q  4 gttaccatggtcatcgaatttgcaggttgtttcgaatccaacaaaatttggatccata 61  Q
    |||||||||||||||||||||| |||||||||||||||| |||||||| |||||||||    
T  41596643 gttaccatggtcatcgaatttgtaggttgtttcgaatccgacaaaattcggatccata 41596586  T

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