View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3237_low_36 (Length: 450)
Name: NF3237_low_36
Description: NF3237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3237_low_36 |
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Alignment Details
Target: chr4 (Bit Score: 329; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 15 - 403
Target Start/End: Complemental strand, 35676345 - 35675956
Alignment:
| Q |
15 |
actaataatgaataatgataaggtgaaaatcaaagcatacaatgagaacaagtcacgttgcatgtactgttttttccgataacattgcaacttgcacagt |
114 |
Q |
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| T |
35676345 |
actaataatgaataatgataaggtgaaaatcaaagcatacgatgagaacaagtcacgttgcatgtactgttttttccgataacattgcaacttgcacagt |
35676246 |
T |
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| Q |
115 |
taaatataccgttaaattcttcatatatgtaagcaaatataaatttggataatgatatagggggaggagaagtgtttgtgtgtgtatagattaatttgaa |
214 |
Q |
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| T |
35676245 |
tgcatataccgttaaattcttcatatatgtaagcaaatataaatttggataatgatatagggggaggagaagtgtttgtgtgtgtatagattaatttgaa |
35676146 |
T |
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| Q |
215 |
ataaagaagnnnnnnncgaagaaacctgctgatgatgatgatcaattagagggtttatctttagatgaacctcaggtagatgatgcatttatcaatgaaa |
314 |
Q |
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| T |
35676145 |
ataaagaagaaaaaaacgaagaaacctgctgatgatgatgatcaattagagggtttatctttagatgaacctgagctagatgatgcatttatcaatgaaa |
35676046 |
T |
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| Q |
315 |
acgatcaactagagtgttacttggaatcttgacccctacatatcacaatattcaaccaactgaattatcc-taagagaacaatttaatta |
403 |
Q |
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| T |
35676045 |
acgatcaactagagtgttacttcgaatcttgacccctacatatcacaatattcaatcaactgagttatccttaagagaacaatttaatta |
35675956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 402 - 440
Target Start/End: Complemental strand, 35675660 - 35675622
Alignment:
| Q |
402 |
tatatgataataaatatatattggtgttggtgtcctatg |
440 |
Q |
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| T |
35675660 |
tatatgataataaatatatattggtgttggtgtcctatg |
35675622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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