View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3237_low_38 (Length: 446)

Name: NF3237_low_38
Description: NF3237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3237_low_38
NF3237_low_38
[»] chr4 (19 HSPs)
chr4 (17-416)||(2533897-2534300)
chr4 (17-415)||(5035207-5035607)
chr4 (23-416)||(2525339-2525736)
chr4 (17-412)||(2490716-2491113)
chr4 (18-412)||(2518821-2519217)
chr4 (18-279)||(2486021-2486291)
chr4 (132-330)||(2467212-2467413)
chr4 (191-323)||(2547221-2547353)
chr4 (206-329)||(2621417-2621540)
chr4 (206-251)||(2361217-2361262)
chr4 (202-251)||(2381641-2381690)
chr4 (202-251)||(2391269-2391318)
chr4 (18-86)||(2467446-2467514)
chr4 (211-251)||(12124594-12124634)
chr4 (221-251)||(2482529-2482559)
chr4 (270-324)||(5106632-5106686)
chr4 (367-412)||(2477156-2477201)
chr4 (270-322)||(2367981-2368033)
chr4 (195-246)||(2393836-2393888)


Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-143; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 17 - 416
Target Start/End: Complemental strand, 2534300 - 2533897
Alignment:
Q  17 caacactccctttccttaatcgtctctttgaaaggttccctaatattacatcacttaatatcactctctctccttaagggg---gaccgagaagccgacc 113  Q
    ||||| ||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||| |  |  | ||   | ||| ||||||||||    
T  2534300 caacaatccctttccttaaccgcctctttgaaaggttccctaatattacatcactcaatatcactctctcccgatgggtggtttgtccgtgaagccgacc 2534201  T
Q  114 tc-ggcgagtttctagcccaaatctctacttcccctttagacctcaaatcactcactctctaccaccctgacagtgtgcctgaaaatgagttccgagctt 212  Q
    || ||||||||||||||| || ||||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||    
T  2534200 tctggcgagtttctagccgaactctctacttccactttagacctcaaatcgctcactctctaccaccctgacagtgttcctgaaaatgagttccgagctt 2534101  T
Q  213 tgtccaagaagatgaaaaatttgacatctctcacttgttatcaaatgagatttatcaacaagaatgatctcaacatcattgctgattgtttcccttccct 312  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||||||||||||||  | | |||||||||||||||||||  ||    
T  2534100 tgtccaagaagatgaaaaatttaacatctctcacttgttatcaaatgagctatatcaacaagaatgatctcttcttgattgctgattgtttccctttact 2534001  T
Q  313 cgaagaactcatccttaccgacactggttgtccccataattgtgctatagatagtgatgatcgattcctggcgcttcccaaactccgcaggattgcttta 412  Q
     ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  2534000 tgaagaactcatccttaccgactctggttgtccccataattgtgcgatagatagtgatgatcaattcttggcgcttcccaaactccgcaggattgcttta 2533901  T
Q  413 actc 416  Q
    ||||    
T  2533900 actc 2533897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 17 - 415
Target Start/End: Complemental strand, 5035607 - 5035207
Alignment:
Q  17 caacactccctttccttaatcgtctctttgaaaggttccctaatattacatcacttaatatcactctctctccttaagg--gggaccgagaagccgacct 114  Q
    ||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| || |  | |   ||  |||||||||  ||||    
T  5035607 caacaatccctttccttagtcgtctctttgaaaggttccctaatattacatcactcaatatcactctcacttccaatgcctggtcccgagaagctcacct 5035508  T
Q  115 cggcgagtttctagcccaaatctctacttcccctttagacctcaaatcactcactctctaccaccctgacagtgtgcctgaaaatgagttccgagctttg 214  Q
    |||||||||||||||  |||||||  ||||||||||| |||||||||| |||||||| |||||| ||| ||| || |||||||||||||| |||||||||    
T  5035507 cggcgagtttctagcgaaaatctccgcttcccctttaaacctcaaatcgctcactctttaccacgctgtcagggttcctgaaaatgagttgcgagctttg 5035408  T
Q  215 tccaagaagatgaaaaatttgacatctctcacttgttatcaaatgagatttatcaacaagaatgatctcaacatcattgctgattgtttcccttccctcg 314  Q
    ||| |||||||||||| ||| || |||||| |||||||||||||||||||||||||||||||||||||   | | |||||||||||||||||||  ||||    
T  5035407 tccgagaagatgaaaagtttaacgtctctcgcttgttatcaaatgagatttatcaacaagaatgatcttttcttgattgctgattgtttccctttactcg 5035308  T
Q  315 aagaactcatccttaccgacactggttgtccccataattgtgctatagatagtgatgatcgattcctggcgcttcccaaactccgcaggattgctttaac 414  Q
    ||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||    
T  5035307 aagaactaatccttactgatactggttgtccccataattgtgctatagatagtgatgatcaattcttagcgcttcccaaactccgcaggattgctttaac 5035208  T
Q  415 t 415  Q
    |    
T  5035207 t 5035207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 23 - 416
Target Start/End: Complemental strand, 2525736 - 2525339
Alignment:
Q  23 tccctttccttaatcgtctctttgaaaggttccctaatattacatcacttaatatcactctctctc-cttaa---gggggaccgagaagccgacctcggc 118  Q
    ||||||| ||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||| ||  |   ||||| ||||||||| |||||| |     
T  2525736 tcccttttcttaatcgtctctttgaaaggttccctaacattgcatcactcaatatcactctctctctctcgatgcgggggcccgagaagctgacctcagt 2525637  T
Q  119 gagtttctagcccaaatctctacttcccctttagacctcaaatcactcactctctaccaccctgacagtgtgcctgaaaatgagttccgagctttgtcca 218  Q
    |||||||||  ||||||||| |||| |||||||||||||||||| |||||||||||||||||   ||  || ||| |||||||||| || | ||||||||    
T  2525636 gagtttctaaaccaaatctccactttccctttagacctcaaatcgctcactctctaccacccccccaaggttcctcaaaatgagttgcgtgttttgtcca 2525537  T
Q  219 agaagatgaaaaatttgacatctctcacttgttatcaaatgagatttatcaacaagaatgatctcaacatcattgctgattgtttcccttccctcgaaga 318  Q
    |||| ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||   | ||||||||||||||||||||   ||||||||    
T  2525536 agaaaatgaaaaatttgacatctctcacttgttatcaactgagatttattaacaagaatgatctgctcttcattgctgattgtttccctctactcgaaga 2525437  T
Q  319 actcatccttaccgacactggttgtccccataattgtgctatagatagtgatgatcgattcctggcgcttcccaaactccgcaggattgctttaactc 416  Q
    ||||||||||||||||||||||||||    ||| ||||  |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||    
T  2525436 actcatccttaccgacactggttgtcgtagtaactgtgtgatagatagtgatgatcaattcttggcgcttcccaaactccgcaggattgctttaactc 2525339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 17 - 412
Target Start/End: Complemental strand, 2491113 - 2490716
Alignment:
Q  17 caacactccctttccttaatcgtctctttgaaaggttccctaatattacatcacttaatatcactctctct--ccttaagggggaccgagaagccgacct 114  Q
    ||||| ||||||||||||||||||||||||||||||||||||| ||||||||| | |||||||| ||||||  ||   |  || ||| |||||  |||||    
T  2491113 caacaatccctttccttaatcgtctctttgaaaggttccctaacattacatcaatcaatatcaccctctcttcccgatacaggaacctagaagttgacct 2491014  T
Q  115 cggcgagtttctagcccaaatctctacttcccctttagacctcaaatcactcactctctaccaccctgacagtgtgcctgaaaatgagttccgagctttg 214  Q
    | ||||| |||| |  |||||||| |||| |||||| ||||||||||| ||| |||||||| | ||   ||| || || | |||||| || |||||||||    
T  2491013 cagcgagcttcttggacaaatctccactttccctttggacctcaaatcgctcgctctctacgagccaatcagggttcccgcaaatgaattgcgagctttg 2490914  T
Q  215 tccaagaagatgaaaaatttgacatctctcacttgttatcaaatgagatttatcaacaagaatgatctcaacatcattgctgattgtttcccttccctcg 314  Q
    |||  || |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||    | |||||||||||||||||||  ||||    
T  2490913 tccgggacgatgaaaaatttgacatctctcacttgttatcgaatgaggtttatcaacaagaatgatctcttttttattgctgattgtttccctttactcg 2490814  T
Q  315 aagaactcatccttaccgacactggttgtccccataattgtgctatagatagtgatgatcgattcctggcgcttcccaaactccgcaggattgcttta 412  Q
    | ||||||||||| |||||||  |||  |||||| |||| ||   |||| | |||||||| |||  ||| ||||||||||||||||| ||||||||||    
T  2490813 acgaactcatcctaaccgacaacggtaatccccaaaattatgtgctagacaatgatgatcaattattggtgcttcccaaactccgcaagattgcttta 2490716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 18 - 412
Target Start/End: Complemental strand, 2519217 - 2518821
Alignment:
Q  18 aacactccctttccttaatcgtctctttgaaaggttccctaatattacatcacttaatatcactctctctccttaagg--gggaccgagaagccgacctc 115  Q
    |||| ||||||||||| ||||||||||||| |||||||| ||  |||||||||| || |||||||||||| |  |||   ||  |||||||| | |||||    
T  2519217 aacaatccctttccttcatcgtctctttgataggttccccaacgttacatcactcaacatcactctctcttcccaagacaggctccgagaagacaacctc 2519118  T
Q  116 ggcgagtttctagcccaaatctctacttcccctttagacctcaaatcactcactctctaccaccctgacagtgtgcctgaaaatgagttccgagctttgt 215  Q
     ||||| ||||| || |||| |  |||| |||||||||||||| ||| |||||||||||||| |||  ||   | ||| || | | ||| | ||||||||    
T  2519117 agcgagcttctaaccaaaatatgcactttccctttagacctcatatcgctcactctctaccatcctatcacccttcctaaagaagggttgcaagctttgt 2519018  T
Q  216 ccaagaagatgaaaaatttgacatctctcacttgttatcaaatgagatttatcaacaagaatgatctcaacatcattgctgattgtttcccttccctcga 315  Q
    |  | || |||||||||||||||| ||||||||||||| |||||| || |||| ||||||||||||||  | |||||||||||||||||||||  ||| |    
T  2519017 ctcaaaacatgaaaaatttgacatatctcacttgttattaaatgaaatatatccacaagaatgatctcttcttcattgctgattgtttccctttactcaa 2518918  T
Q  316 agaactcatccttaccgacactggttgtccccataattgtgctatagatagtgatgatcgattcctggcgcttcccaaactccgcaggattgcttta 412  Q
    |||||||||||||||||| ||   || | || || |||  |  ||||||| ||||  || |||| |||||||||| |||||||||| ||||||||||    
T  2518917 agaactcatccttaccgataccatttataccaatgatttggtgatagatattgattttcaattcttggcgcttcctaaactccgcaagattgcttta 2518821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 18 - 279
Target Start/End: Complemental strand, 2486291 - 2486021
Alignment:
Q  18 aacactccctttccttaatcgtctctttgaaaggttccctaatattacatcacttaatatcactctctctccttaagg--gggaccgagaagccgacctc 115  Q
    |||| ||||||||||| ||||||||||| |  ||||||||||| ||||||| |  ||||||||||||||| |  |||   || || |||||   ||||||    
T  2486291 aacaatccctttccttcatcgtctcttttatgggttccctaatgttacatcccacaatatcactctctcttcccaagacaggaacagagaaagtgacctc 2486192  T
Q  116 ggcgagtttctagcccaaatctctacttcccctttagacctcaaatcactcactctctaccaccctgacagtgtgcctgaaaatgagttccgagctttgt 215  Q
    |||||| ||||  | || ||||| |||| |||||| |||||||||||||||||||||||| | ||   |||  | |||| |||||   | ||||||||||    
T  2486191 ggcgagcttcttacacatatctccactttccctttggacctcaaatcactcactctctacgagcccatcaggcttcctgcaaatgctctgcgagctttgt 2486092  T
Q  216 ccaagaagatgaaaaatttgacatctc-------tcacttgttatcaaatgagatttatcaacaagaatga 279  Q
    |||| ||||||||||||||||||||||       ||| ||||||| |||| ||||||||||||||||||||    
T  2486091 ccaaaaagatgaaaaatttgacatctctcaatagtcaattgttataaaattagatttatcaacaagaatga 2486021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 132 - 330
Target Start/End: Complemental strand, 2467413 - 2467212
Alignment:
Q  132 aaatctctacttcccctttagacctcaaatcactcactctctaccaccctgacagtgtgcctgaaaatgagttccgagctttgtccaagaagatgaaaaa 231  Q
    ||||||| |||| |||||| ||||||||||| |||||||||||||||||    |  || |||| | ||| ||| |||||||| |||||  ||||||||||    
T  2467413 aaatctccactttccctttggacctcaaatccctcactctctaccaccccataacggttcctgcagatgggttgcgagctttctccaaagagatgaaaaa 2467314  T
Q  232 tttgacatctctcacttgttatcaaatgagatt---tatcaacaagaatgatctcaacatcattgctgattgtttcccttccctcgaagaactcatcctt 328  Q
    ||||||||| ||||||||||| | |||    ||   |||| ||||||| |||||   | |||||||||||||||||||||  |||||||| |||||||||    
T  2467313 tttgacatcactcacttgttaccgaattgcttttgatatcgacaagaacgatcttttcttcattgctgattgtttccctttactcgaagagctcatcctt 2467214  T
Q  329 ac 330  Q
    ||    
T  2467213 ac 2467212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 191 - 323
Target Start/End: Complemental strand, 2547353 - 2547221
Alignment:
Q  191 cctgaaaatgagttccgagctttgtccaagaagatgaaaaatttgacatctctcacttgttatcaaatgagatttatcaacaagaatgatctcaacatca 290  Q
    |||| ||||| ||| |||||||||||  | ||||||||||||||||| ||||||| |||||   |||| |  ||||||| |||||||||| |   | |||    
T  2547353 cctgcaaatgggttgcgagctttgtctgaaaagatgaaaaatttgacgtctctcatttgttccaaaatcacctttatcagcaagaatgatttattcttca 2547254  T
Q  291 ttgctgattgtttcccttccctcgaagaactca 323  Q
    ||||||||||||||||||  || ||||||||||    
T  2547253 ttgctgattgtttccctttacttgaagaactca 2547221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 206 - 329
Target Start/End: Original strand, 2621417 - 2621540
Alignment:
Q  206 cgagctttgtccaagaagatgaaaaatttgacatctctcacttgttatcaaatgagatttatcaacaagaatgatctcaacatcattgctgattgtttcc 305  Q
    |||||||| ||||| || ||||||||||||||||||||||||||||| | ||| |     |||  ||||||||||||   | || |||||||||||||||    
T  2621417 cgagctttctccaaaaatatgaaaaatttgacatctctcacttgttaccgaattaataaaatccgcaagaatgatctattcttccttgctgattgtttcc 2621516  T
Q  306 cttccctcgaagaactcatcctta 329  Q
    |||  ||||||||||||| |||||    
T  2621517 ctttactcgaagaactcaacctta 2621540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 206 - 251
Target Start/End: Original strand, 2361217 - 2361262
Alignment:
Q  206 cgagctttgtccaagaagatgaaaaatttgacatctctcacttgtt 251  Q
    |||||||||||||| || ||||||||||||||||||||||||||||    
T  2361217 cgagctttgtccaaaaaaatgaaaaatttgacatctctcacttgtt 2361262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 202 - 251
Target Start/End: Original strand, 2381641 - 2381690
Alignment:
Q  202 gttccgagctttgtccaagaagatgaaaaatttgacatctctcacttgtt 251  Q
    |||||||||||||||||| ||||||||||||||||| ||||| |||||||    
T  2381641 gttccgagctttgtccaaaaagatgaaaaatttgacctctcttacttgtt 2381690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 202 - 251
Target Start/End: Original strand, 2391269 - 2391318
Alignment:
Q  202 gttccgagctttgtccaagaagatgaaaaatttgacatctctcacttgtt 251  Q
    |||||||||||||||||| ||||||||||||||||| ||||| |||||||    
T  2391269 gttccgagctttgtccaaaaagatgaaaaatttgacctctcttacttgtt 2391318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 2467514 - 2467446
Alignment:
Q  18 aacactccctttccttaatcgtctctttgaaaggttccctaatattacatcacttaatatcactctctc 86  Q
    |||| ||||||| ||| |||||||||||||||||||||| ||||| | |||| || | |||||||||||    
T  2467514 aacaatccctttacttcatcgtctctttgaaaggttccccaatatcagatcaattgacatcactctctc 2467446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 211 - 251
Target Start/End: Complemental strand, 12124634 - 12124594
Alignment:
Q  211 tttgtccaagaagatgaaaaatttgacatctctcacttgtt 251  Q
    ||||||||| ||||||||||||||||| |||||||||||||    
T  12124634 tttgtccaaaaagatgaaaaatttgacctctctcacttgtt 12124594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 221 - 251
Target Start/End: Complemental strand, 2482559 - 2482529
Alignment:
Q  221 aagatgaaaaatttgacatctctcacttgtt 251  Q
    |||||||||||||||||||||||||||||||    
T  2482559 aagatgaaaaatttgacatctctcacttgtt 2482529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 324
Target Start/End: Original strand, 5106632 - 5106686
Alignment:
Q  270 acaagaatgatctcaacatcattgctgattgtttcccttccctcgaagaactcat 324  Q
    |||||| |||||||  | |||||||||||||||||||||  ||||||||||||||    
T  5106632 acaagagtgatctcttcttcattgctgattgtttccctttactcgaagaactcat 5106686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 367 - 412
Target Start/End: Complemental strand, 2477201 - 2477156
Alignment:
Q  367 tgatgatcgattcctggcgcttcccaaactccgcaggattgcttta 412  Q
    |||||||| |||  ||||||||||||||||||||| ||||||||||    
T  2477201 tgatgatcaattgttggcgcttcccaaactccgcaagattgcttta 2477156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 322
Target Start/End: Original strand, 2367981 - 2368033
Alignment:
Q  270 acaagaatgatctcaacatcattgctgattgtttcccttccctcgaagaactc 322  Q
    |||||| |||||||  | |||||||||||||||||||||  ||||||||||||    
T  2367981 acaagagtgatctcttcttcattgctgattgtttccctttactcgaagaactc 2368033  T

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Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 195 - 246
Target Start/End: Original strand, 2393836 - 2393888
Alignment:
Q  195 aaaatgagttccgagctttgtccaagaagatg-aaaaatttgacatctctcac 246  Q
    |||||| ||| |||||||||||| | |||||| ||||||||||||||||||||    
T  2393836 aaaatgggttgcgagctttgtcccaaaagatgaaaaaatttgacatctctcac 2393888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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