View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3237_low_39 (Length: 441)
Name: NF3237_low_39
Description: NF3237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3237_low_39 |
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Alignment Details
Target: chr4 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 18 - 433
Target Start/End: Complemental strand, 39378960 - 39378545
Alignment:
| Q |
18 |
aaaactaccaaacaatctctcaaacatgcaaaacttaaccgtagcttcgtttaagaacaattacttcactggttttctacctaaagatttgcgaaattta |
117 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||| |
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| T |
39378960 |
aaaactaccaaacaacctctcaaacatgcaaaacttaaccgtagcttcgtttaagaacaattacttcactggttttcttcctaaagatttacgaacttta |
39378861 |
T |
|
| Q |
118 |
caagttttggatctgtcttccaatttgttgaatgggtcattaactcaagattttggtggtgattccttgcgttacctgaatgtttcttacaacagatttt |
217 |
Q |
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||| |||||||||||||||| |||||||| || ||||||||||||||||||||||| |||||||||||||||||| |||||||||| ||||||||||||| |
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| T |
39378860 |
caaattttggatctgtcttcaaatttgttaaacgggtcattaactcaagattttggcggtgattccttgcgttacttgaatgtttcctacaacagatttt |
39378761 |
T |
|
| Q |
218 |
ccggtaaaattccaccggaattcgccgagaaaattccgagtaacgcaaccgttgatctatcattcaacaatctcactggtgaaataccagagtcccctgt |
317 |
Q |
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||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |
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| T |
39378760 |
ccggtgaaattccacgggaattcgccgagaaaattcccagtaacgcaaccgttgatctatcattcaacaatctcactggcgaaataccggagtcccctgt |
39378661 |
T |
|
| Q |
318 |
tttgttgaaccaggaaacaaaagtgttttctggtaatagtgatctatgtggtgaaccaatgaaaaatccttgttctattccttcttctccttcttctaat |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39378660 |
tttgttgaaccaggaaacaaaagtgttttctggtaatagtgatctatgtggtgaaccaatgaaaaatccttgttctattccttcttctccttcttctaat |
39378561 |
T |
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| Q |
418 |
cctcaaggttcttctc |
433 |
Q |
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|||||||||||||||| |
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| T |
39378560 |
cctcaaggttcttctc |
39378545 |
T |
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