View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3237_low_40 (Length: 437)
Name: NF3237_low_40
Description: NF3237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3237_low_40 |
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Alignment Details
Target: chr3 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 9 - 419
Target Start/End: Original strand, 29003131 - 29003545
Alignment:
| Q |
9 |
agcagagagagattgaaaatgactgaaattaaattatgaagcacataactaggactgctcaacctactaagtggaaacaactaacaag----ttggaata |
104 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
29003131 |
agcagaaagagattgaaaatgactgaaattaaattatgaagcacataactaggactgctcaacctactaagtggaaacaactaacaagaaagttggaata |
29003230 |
T |
|
| Q |
105 |
caaaaagatctttatatattgtagtacactctgccatataacaagctgaagcagataaacacatgcatacaaaattaaactgagccctcaaattgttgaa |
204 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |
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| T |
29003231 |
caaaaagatctttatatattgtggtacactctgccatataacaagctgaagcagataaacacatgcataaaaaattaaactaagccctcaaattgttgaa |
29003330 |
T |
|
| Q |
205 |
gtgtgaactatttaaatatatgtacacaacacagcacacactattcaaataaacaaagacttatagaaaactttcaaagacgagatagagccataatctg |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29003331 |
gtgtgaactatttaaatatatgtacacaacacagcacacactattcaaataaacaaagacttatagaaaactttcaaagacgagatagagccataatctg |
29003430 |
T |
|
| Q |
305 |
gtcattattatgattgacttgattattaggcttcttcttattcttcttctcatcatttaccacaaaacacttagctttggctcttaattcaaatttctga |
404 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29003431 |
gtcattattatgattgacttgattattaggcttcttattattcttcttctcatcatttaccacaaaacacttagctttggctcttaattcaaatttctga |
29003530 |
T |
|
| Q |
405 |
atcttacctgttaaa |
419 |
Q |
| |
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||||||||||||||| |
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| T |
29003531 |
atcttacctgttaaa |
29003545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 138; Significance: 5e-72; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 9 - 247
Target Start/End: Original strand, 11045997 - 11046226
Alignment:
| Q |
9 |
agcagagagagattgaaaatgactgaaattaaattatgaagcacataactaggactgctcaacctactaagtggaaacaactaaca----agttggaata |
104 |
Q |
| |
|
|||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |
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| T |
11045997 |
agcagaaagagattgaaaatgagtcaaattaaattatgaagcacataactaggactgctcaacctactaagtggcaacaactaacaagagagttggaata |
11046096 |
T |
|
| Q |
105 |
caaaaagatctttatatattgtagtacactctgccatataacaagctgaagcagataaacacatgcatacaaaattaaactgagccctcaaattgttgaa |
204 |
Q |
| |
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||||||| ||| |||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||||| |
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| T |
11046097 |
caaaaagttctgtatatattgtggtacactctgccatataacaagctgaagcagata-------------aaaattaaactaagccttcaaattgttgaa |
11046183 |
T |
|
| Q |
205 |
gtgtgaactatttaaatatatgtacacaacacagcacacacta |
247 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
11046184 |
gtttgaactatttaaatatatgtacacaacacagcacagacta |
11046226 |
T |
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