View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3237_low_41 (Length: 432)
Name: NF3237_low_41
Description: NF3237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3237_low_41 |
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Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 92 - 427
Target Start/End: Complemental strand, 25085408 - 25085074
Alignment:
| Q |
92 |
tgttgaattaaacctttatacttttttccatgaattaataatgttaacaagtgatgcctttcataaatatatatgttacttttgtcnnnnnnnnnn---- |
187 |
Q |
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| T |
25085408 |
tgttgaattaaacctttatacttttttccatgaattaa----gttaacaagtgatgcctttcataaatatatatgttacttttgtcaaaaaaaaaaaata |
25085313 |
T |
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| Q |
188 |
tatgttgctgattaatgtggnnnnnnntaccgtttacatgatatcttgacccaacttacaagaaaggtggcatcaacttattgagaagaatatatggatc |
287 |
Q |
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| T |
25085312 |
tatgttgctgattaatgtggaaaaaaataccgtttacatgatatcttgacccaacttacaagaaaggtggcatcaacttattgagaagaatatatagatc |
25085213 |
T |
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| Q |
288 |
ttcatagtattgaatgtaatgaatttaatgaaatatcatttgcagcatatacataagtttttatgcttgaatatttacatttatagttgtgtacaatatg |
387 |
Q |
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| T |
25085212 |
ttcatagtattgaatgtaatgaatttaatgaa-tatcatttgcagcatatacataagtttttatgcttgaatatttacatttatagttgtgtacaatatg |
25085114 |
T |
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| Q |
388 |
attattttgattttgttgacaaatactcacctatgctact |
427 |
Q |
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| T |
25085113 |
attattttgattttgttgacaaatactcacccatgatact |
25085074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 266 - 350
Target Start/End: Complemental strand, 25073607 - 25073524
Alignment:
| Q |
266 |
tattgagaagaatatatggatcttcatagtattgaatgtaatgaatttaatgaaatatcatttgcagcatatacataagttttta |
350 |
Q |
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| T |
25073607 |
tattgagaagaatatatagaccttcatagtattaaacctattgaatttaatg-tataccatttgcaatatagacataagttttta |
25073524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 352
Target Start/End: Complemental strand, 25091346 - 25091304
Alignment:
| Q |
309 |
aatttaatgaaatatcatttgcagcatatacataagtttttatg |
352 |
Q |
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| T |
25091346 |
aatttaatgaa-taccatttgcagcatatacataagtttttatg |
25091304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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