View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3237_low_42 (Length: 432)
Name: NF3237_low_42
Description: NF3237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3237_low_42 |
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Alignment Details
Target: chr1 (Bit Score: 309; Significance: 1e-174; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 18 - 424
Target Start/End: Original strand, 26782606 - 26783017
Alignment:
| Q |
18 |
atccaaaggccaggatgaagaaagcaattgcttgcatatataggaatatgtagtagtaatttttcccatacataagatcatagcagccacaaaataggag |
117 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26782606 |
atccaaaggccaggaggaagaaagcaattgcttgcatatataggaatatgtagtagtaatttttcccatacataagatcatagcagccacaaaataggag |
26782705 |
T |
|
| Q |
118 |
gtagaatccaacaaaaagttctgacatgtgaatcctaaaacacaaaatatcacnnnnnnntgaattatggattgaaaatatggaatactctct--aatat |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||| |
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| T |
26782706 |
gtagaatccaacaaaaagttctgacatgtgaatcctaaaacacaaaatatcacaaaaaaatgaattatggattgaaagtatggaatactctctctaatat |
26782805 |
T |
|
| Q |
216 |
annnnnnnaatcggtctctaattttaaatgtaagcaaaaagtctatacaacaaatacattgacc---nnnnnnnnacctgtttccaatcttaaattgaag |
312 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
26782806 |
atttttttaatcggtctctaattttaaatgtaagcaaaaagtctatacaacaaatacattgacctttttttttttacctgtttccaatcttaaattgaag |
26782905 |
T |
|
| Q |
313 |
cttttcaagtcctttactatcttggtcctcaagagcatttccaagtttttctgtgacaatccattcattcactctactagtctctagtataccaataatt |
412 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26782906 |
cttttcaagtcctttactatcttggtccttaagagcatttccaagtttttctgtgacaatccattcattcactctactagtctctagtataccaataatt |
26783005 |
T |
|
| Q |
413 |
gttgcctttgct |
424 |
Q |
| |
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|||||||||||| |
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| T |
26783006 |
gttgcctttgct |
26783017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 18 - 155
Target Start/End: Original strand, 26788917 - 26789054
Alignment:
| Q |
18 |
atccaaaggccaggatgaagaaagcaattgcttgcatatataggaatatgtagtagtaatttttcccatacataagatcatagcagccacaaaataggag |
117 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||| || |||| ||||||| || | | ||||||||||| ||||||||||||||| ||||||||||| || |
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| T |
26788917 |
atccaaatgccaggatgaagaaagcaatagcttgaatgtataagaatatgaagaattgatttttcccatgcataagatcatagcaaccacaaaatagaag |
26789016 |
T |
|
| Q |
118 |
gtagaatccaacaaaaagttctgacatgtgaatcctaa |
155 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||| |
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| T |
26789017 |
gtagaatccaacaaaaagttctgacaggtgaatcctaa |
26789054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 18 - 155
Target Start/End: Original strand, 26815754 - 26815891
Alignment:
| Q |
18 |
atccaaaggccaggatgaagaaagcaattgcttgcatatataggaatatgtagtagtaatttttcccatacataagatcatagcagccacaaaataggag |
117 |
Q |
| |
|
||||||| |||| ||||| |||||| | |||||||| |||||||||||| || ||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
26815754 |
atccaaatgccacgatgagaaaagcagtcgcttgcatgtataggaatatgaagaagtaatttttcccatacataaaatcatagcagccacaaaataggag |
26815853 |
T |
|
| Q |
118 |
gtagaatccaacaaaaagttctgacatgtgaatcctaa |
155 |
Q |
| |
|
||||||||||||| |||||||| |||||||||||||| |
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| T |
26815854 |
gtagaatccaacacaaagttctttcatgtgaatcctaa |
26815891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 18 - 155
Target Start/End: Original strand, 26829276 - 26829413
Alignment:
| Q |
18 |
atccaaaggccaggatgaagaaagcaattgcttgcatatataggaatatgtagtagtaatttttcccatacataagatcatagcagccacaaaataggag |
117 |
Q |
| |
|
||||||| |||| |||||||||||||| ||||| || |||||||||||| || ||| ||||||||||||||||||||||||||||||||| || ||||| |
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| T |
26829276 |
atccaaatgccatgatgaagaaagcaaacgcttggatgtataggaatatgaagaagtgatttttcccatacataagatcatagcagccacataagaggag |
26829375 |
T |
|
| Q |
118 |
gtagaatccaacaaaaagttctgacatgtgaatcctaa |
155 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||||||||| |
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|
| T |
26829376 |
gtagaatccaacaacaagttctaacatgtgaatcctaa |
26829413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 344 - 422
Target Start/End: Original strand, 26816140 - 26816218
Alignment:
| Q |
344 |
agagcatttccaagtttttctgtgacaatccattcattcactctactagtctctagtataccaataattgttgcctttg |
422 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |
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| T |
26816140 |
agagcatctccaagtttttcagtgacaatccattcattcactctactagtctctagtagaccaataattgttgcttttg |
26816218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 344 - 422
Target Start/End: Original strand, 26789310 - 26789388
Alignment:
| Q |
344 |
agagcatttccaagtttttctgtgacaatccattcattcactctactagtctctagtataccaataattgttgcctttg |
422 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||| |
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| T |
26789310 |
agagcatctccaagtttttcagtgacaatccattcattcactctactagtctctagcagaccaataattgttgcttttg |
26789388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 346 - 422
Target Start/End: Original strand, 26829828 - 26829904
Alignment:
| Q |
346 |
agcatttccaagtttttctgtgacaatccattcattcactctactagtctctagtataccaataattgttgcctttg |
422 |
Q |
| |
|
||||| |||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||| |
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| T |
26829828 |
agcatctccaagtttttcagtgacaatccattcattcactctactagcctctagtagaccaataatcgttgcctttg |
26829904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 344 - 424
Target Start/End: Complemental strand, 41920924 - 41920844
Alignment:
| Q |
344 |
agagcatttccaagtttttctgtgacaatccattcattcactctactagtctctagtataccaataattgttgcctttgct |
424 |
Q |
| |
|
||||||| ||||||||| || |||||||||||||||||||||| ||||| ||| |||| |||||||| |||||||||||| |
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| T |
41920924 |
agagcatctccaagtttctcagtgacaatccattcattcactcgactagcctccagtagaccaataacagttgcctttgct |
41920844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 343 - 385
Target Start/End: Complemental strand, 2301260 - 2301218
Alignment:
| Q |
343 |
aagagcatttccaagtttttctgtgacaatccattcattcact |
385 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
2301260 |
aagagcatttccaagttttttagtgacaatccattcattcact |
2301218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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