View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3237_low_44 (Length: 409)
Name: NF3237_low_44
Description: NF3237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3237_low_44 |
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Alignment Details
Target: chr1 (Bit Score: 359; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 18 - 396
Target Start/End: Complemental strand, 26790735 - 26790357
Alignment:
| Q |
18 |
gtgggccagcaaatcttttcagaaaaattgttatggagattgtcacaagcaaggtaaaaacaaggttgatcctttaatgaatatattggccaattataat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26790735 |
gtgggccagcaaatcttttcagaaaaattgttatggagattgtcacaagcaaggtaaaaacaaggttgatcctttaatgaatatattggccaattataat |
26790636 |
T |
|
| Q |
118 |
ataatttattatatgaattcatcaatgtgcttgtttaattttaccattgcagaaagtgtctttgttgaagaagctacatattgtttacagttttttcttt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26790635 |
ataatttattatatgaattcatcaatgtgcttgtttaattttaccattgcagaaagtgtctttgttgaagaagctacatattgtttacagttttttcttt |
26790536 |
T |
|
| Q |
218 |
attcgaaagattgtggtccatatacacacatttgtgttctattgcatattgttacctgcaactgttatggtacctgaggttgtggttcctaaatggggaa |
317 |
Q |
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||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |
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| T |
26790535 |
attcgaaagattgtggtgcacgtacacacatttgtgttctattgcatattgttacctgcaactgttatggttcctgaggttgtggtccctaaatggggaa |
26790436 |
T |
|
| Q |
318 |
ctgtttatgtcccttccatcatcacccttcttaaagctgttggaacaccaaggtctttatttactcaacttttcatttc |
396 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26790435 |
ctgtttatgtcccttccatcatcacccttcttaaagctgttggaacaccaaggtctttatttactcaacttttcatttc |
26790357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 110 - 391
Target Start/End: Complemental strand, 26817353 - 26817072
Alignment:
| Q |
110 |
attataatataatttattatatgaattcatcaatgtgcttgtttaattttaccattgcagaaagtgtctttgttgaagaagctacatattgtttacagtt |
209 |
Q |
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|||||||| ||| |||| || | ||||||| |||| |||||||||| | | |||||||||||||||||||| ||||||| || ||||||||| || || |
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| T |
26817353 |
attataatttaacttatgatctaaattcatgcatgtccttgtttaatatgtctattgcagaaagtgtctttgtggaagaagttatatattgtttgcaatt |
26817254 |
T |
|
| Q |
210 |
ttttctttattcgaaagattgtggtccatatacacacatttgtgttctattgcatattgttacctgcaactgttatggtacctgaggttgtggttcctaa |
309 |
Q |
| |
|
|||||||| ||| |||||||||||| || |||||||||||||||||||||||| | |||||||||||||||||||||| |||||| ||||||| ||||| |
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| T |
26817253 |
ttttctttgttcaaaagattgtggtgcacatacacacatttgtgttctattgcgttctgttacctgcaactgttatggtgcctgagattgtggtccctaa |
26817154 |
T |
|
| Q |
310 |
atggggaactgtttatgtcccttccatcatcacccttcttaaagctgttggaacaccaaggtctttatttactcaacttttc |
391 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
26817153 |
atggggaactgtttatgtcccttccatcatcacccttctaaaagctgttggaacaccaaggtctttatttactcaacttttc |
26817072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 162 - 371
Target Start/End: Complemental strand, 26830944 - 26830735
Alignment:
| Q |
162 |
cattgcagaaagtgtctttgttgaagaagctacatattgtttacagttttttctttattcgaaagattgtggtccatatacacacatttgtgttctattg |
261 |
Q |
| |
|
||||||||||||||||||||| ||||||| || || |||||||||||||||||||| |||| |||||||||| ||| || |||||||||| |||||||| |
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| T |
26830944 |
cattgcagaaagtgtctttgtggaagaagatatatgttgtttacagttttttctttgttcggaagattgtggcccacatcaacacatttgttttctattg |
26830845 |
T |
|
| Q |
262 |
catattgttacctgcaactgttatggtacctgaggttgtggttcctaaatggggaactgtttatgtcccttccatcatcacccttcttaaagctgttgga |
361 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |||||||||||||||||||| | || ||||||||| |
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| T |
26830844 |
cattgtgttacctgcaactgttatggtacctgaggttgtggtccctaaatggggagctgtttatatcccttccatcatcacccttttaaatgctgttgga |
26830745 |
T |
|
| Q |
362 |
acaccaaggt |
371 |
Q |
| |
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|| ||||||| |
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| T |
26830744 |
actccaaggt |
26830735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 166 - 399
Target Start/End: Complemental strand, 26784219 - 26783987
Alignment:
| Q |
166 |
gcagaaagtgtctttgttgaagaagctacatattgtttacagttttttctttattcgaaagattgtggtccatatacacacatttgtgttctattgcata |
265 |
Q |
| |
|
||||||||||||||||| |||||| | |||| |||||||||||||||||| | || ||||||||||| || ||| ||||||||||||| |||||||| |
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|
| T |
26784219 |
gcagaaagtgtctttgtggaagaaaacatatatggtttacagttttttctttgtccggaagattgtggttcacataaacacatttgtgttatattgcatt |
26784120 |
T |
|
| Q |
266 |
ttgttacctgcaactgttatggtacctgaggttgtggttcctaaatggggaactgtttatgtcccttccatcatcacccttcttaaagctgttggaacac |
365 |
Q |
| |
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|||||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||| ||||| ||||||||||||| || || || |||| | ||| |
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| T |
26784119 |
gtgttacctgcaactgttatggtgcctgagattgtggtccctaaatggggaactgtttatatccctaccatcatcaccctcctaaacgcggttgcagcac |
26784020 |
T |
|
| Q |
366 |
caaggtctttatttactcaacttttcatttcttc |
399 |
Q |
| |
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|||||||||| |||||| |||||||||| ||||| |
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| T |
26784019 |
caaggtcttt-tttacttaacttttcatctcttc |
26783987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 26831086 - 26831030
Alignment:
| Q |
18 |
gtgggccagcaaatcttttcagaaaaattgttatggagattgtcacaagcaaggtaa |
74 |
Q |
| |
|
|||| ||||| ||||||||||||||||| || |||||||||||||||| |||||||| |
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|
| T |
26831086 |
gtggaccagccaatcttttcagaaaaatggtaatggagattgtcacaaacaaggtaa |
26831030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 162 - 379
Target Start/End: Original strand, 41920374 - 41920591
Alignment:
| Q |
162 |
cattgcagaaagtgtctttgttgaagaagctacatattgtttacagttttttctttattcgaaagattgtggtccatatacacacatttgtgttctattg |
261 |
Q |
| |
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|||||||||||||||| |||| ||||||| ||||| | |||||||||| |||||| |||| || | | | || || | || |||||||| ||||| |
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| T |
41920374 |
cattgcagaaagtgtccttgtggaagaagatacatgtaatttacagtttcttctttgttcggaaagtgatagcacacatcaatacgtttgtgttttattg |
41920473 |
T |
|
| Q |
262 |
catattgttacctgcaactgttatggtacctgaggttgtggttcctaaatggggaactgtttatgtcccttccatcatcacccttcttaaagctgttgga |
361 |
Q |
| |
|
||| | |||||||||| ||| |||||||||| |||| || || ||||||||| |||||||| | ||||| | ||||| |||||||| || |||||| |
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| T |
41920474 |
cattgttctacctgcaacagttttggtacctgaagttgcagtcccaaaatggggagctgtttatattccttcagttatcactcttcttaatgcagttgga |
41920573 |
T |
|
| Q |
362 |
acaccaaggtctttattt |
379 |
Q |
| |
|
|| ||||||| ||||||| |
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|
| T |
41920574 |
actccaaggtgtttattt |
41920591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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