View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3237_low_45 (Length: 407)

Name: NF3237_low_45
Description: NF3237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3237_low_45
NF3237_low_45
[»] chr7 (5 HSPs)
chr7 (51-389)||(23113730-23114066)
chr7 (167-286)||(7237860-7237979)
chr7 (1-54)||(23114102-23114155)
chr7 (108-153)||(7237781-7237825)
chr7 (264-313)||(47727070-47727119)
[»] scaffold0097 (2 HSPs)
scaffold0097 (167-286)||(21450-21569)
scaffold0097 (108-157)||(21371-21419)
[»] chr8 (6 HSPs)
chr8 (167-286)||(22531313-22531432)
chr8 (167-286)||(22535998-22536117)
chr8 (167-286)||(25993919-25994038)
chr8 (108-157)||(22531234-22531282)
chr8 (108-157)||(22535919-22535967)
chr8 (108-157)||(25993840-25993888)
[»] chr5 (2 HSPs)
chr5 (167-286)||(13191744-13191863)
chr5 (108-157)||(13191665-13191713)
[»] chr2 (3 HSPs)
chr2 (167-286)||(20717613-20717732)
chr2 (108-157)||(20717534-20717582)
chr2 (167-224)||(28219076-28219133)
[»] chr6 (3 HSPs)
chr6 (167-286)||(33091131-33091251)
chr6 (167-249)||(10871257-10871339)
chr6 (108-157)||(33091282-33091330)
[»] chr1 (5 HSPs)
chr1 (167-275)||(31991654-31991762)
chr1 (167-286)||(30190831-30190940)
chr1 (167-245)||(19337655-19337733)
chr1 (108-157)||(30190752-30190800)
chr1 (108-157)||(31991576-31991624)
[»] chr3 (5 HSPs)
chr3 (167-286)||(49368392-49368515)
chr3 (167-286)||(20983235-20983343)
chr3 (108-157)||(20983374-20983422)
chr3 (108-157)||(49368313-49368361)
chr3 (167-224)||(42029299-42029356)
[»] chr4 (1 HSPs)
chr4 (184-313)||(37664354-37664483)
[»] scaffold0402 (1 HSPs)
scaffold0402 (167-245)||(717-795)


Alignment Details
Target: chr7 (Bit Score: 311; Significance: 1e-175; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 51 - 389
Target Start/End: Complemental strand, 23114066 - 23113730
Alignment:
Q  51 tgagcagacaccatagaagaagaaaatggagaaaaaacgtatggaaaataagtatttagtagaggaagaggcaaataaaattgagggtagaatagtaaca 150  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  23114066 tgagcagacaccatagaagaagaaaatggagaaaaaacttatggaaaataagtatttagtagaggaagaggcaaataaaat-gagggtagaatagtaaca 23113968  T
Q  151 tttcaagcctcgacctaaattgggggaaatgagaaattgaaagattgagtggtattgaatggaattggttccattgtgttccattgcattccatttacat 250  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  23113967 tttcaagcctcgacctaaattgggggaaatgagaaattgaaagattgagtggtattgaatggaattggttccattgtgttccattccattccatttacat 23113868  T
Q  251 cccatcaatccaaacaacggaatttaattatataccgttccattccaccacatcccatcaatccaatgcacggtggagattaatatataatttctatttg 350  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  23113867 cccatcaatccaaacaac-gaatttaattatataccgttccattccaccacatcccatcaatccaatgcacggtggagattaatatataatttctacttg 23113769  T
Q  351 gagggtcatttatgtcacacattttatgttgagctaaat 389  Q
    |||||||||||||||||||||||||||||||||||||||    
T  23113768 gagggtcatttatgtcacacattttatgttgagctaaat 23113730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 167 - 286
Target Start/End: Original strand, 7237860 - 7237979
Alignment:
Q  167 aaattgggggaaatgagaaattgaaagattgagtggtattgaatggaattggttccattgtgttccattgcattccatttacatcccatcaatccaaaca 266  Q
    ||||| |||| |||||||||||||| ||||||||| ||| ||||||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||    
T  7237860 aaatttgggggaatgagaaattgaaggattgagtgatatagaatggaattgattccattgtgttccattccgttccatttacatcccatcaatccaaaca 7237959  T
Q  267 acggaatttaattatatacc 286  Q
    | | ||||| ||||||||||    
T  7237960 atgaaattttattatatacc 7237979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 23114155 - 23114102
Alignment:
Q  1 agtaatgttgcagtgagaacaaaggcggaagaaggaaagaaggtctactgtgag 54  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23114155 agtaatgttgcagtgagaacaaaggcggaagaaggaaagaaggtctactgtgag 23114102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 108 - 153
Target Start/End: Original strand, 7237781 - 7237825
Alignment:
Q  108 agtagaggaagaggcaaataaaattgagggtagaatagtaacattt 153  Q
    ||||||||||||||||||||||| ||||||||||||||||| ||||    
T  7237781 agtagaggaagaggcaaataaaa-tgagggtagaatagtaaaattt 7237825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 313
Target Start/End: Original strand, 47727070 - 47727119
Alignment:
Q  264 acaacggaatttaattatataccgttccattccaccacatcccatcaatc 313  Q
    ||||||||||||||||||||  || |||||||||||||||| | ||||||    
T  47727070 acaacggaatttaattatatgtcggtccattccaccacatctcctcaatc 47727119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 84; Significance: 8e-40; HSPs: 2)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 167 - 286
Target Start/End: Original strand, 21450 - 21569
Alignment:
Q  167 aaattgggggaaatgagaaattgaaagattgagtggtattgaatggaattggttccattgtgttccattgcattccatttacatcccatcaatccaaaca 266  Q
    |||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||  ||||||| |||||||| |||||||||||||||||||||    
T  21450 aaattggggggaatgagaaattgaaggattgagtggtatagaatggaattggttccattgcattccattccattccatgtacatcccatcaatccaaaca 21549  T
Q  267 acggaatttaattatatacc 286  Q
    | ||||||| ||||||||||    
T  21550 atggaattttattatatacc 21569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 108 - 157
Target Start/End: Original strand, 21371 - 21419
Alignment:
Q  108 agtagaggaagaggcaaataaaattgagggtagaatagtaacatttcaag 157  Q
    |||||||||||||||||||||||  |||||||||||||||| ||||||||    
T  21371 agtagaggaagaggcaaataaaa-ggagggtagaatagtaaaatttcaag 21419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 84; Significance: 8e-40; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 167 - 286
Target Start/End: Original strand, 22531313 - 22531432
Alignment:
Q  167 aaattgggggaaatgagaaattgaaagattgagtggtattgaatggaattggttccattgtgttccattgcattccatttacatcccatcaatccaaaca 266  Q
    |||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||  ||||||| |||||||| |||||||||||||||||||||    
T  22531313 aaattggggggaatgagaaattgaaggattgagtggtatagaatggaattggttccattgcattccattccattccatgtacatcccatcaatccaaaca 22531412  T
Q  267 acggaatttaattatatacc 286  Q
    | ||||||| ||||||||||    
T  22531413 atggaattttattatatacc 22531432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 167 - 286
Target Start/End: Original strand, 22535998 - 22536117
Alignment:
Q  167 aaattgggggaaatgagaaattgaaagattgagtggtattgaatggaattggttccattgtgttccattgcattccatttacatcccatcaatccaaaca 266  Q
    |||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||  ||||||| |||||||| |||||||||||||||||||||    
T  22535998 aaattggggggaatgagaaattgaaggattgagtggtatagaatggaattggttccattgcattccattccattccatgtacatcccatcaatccaaaca 22536097  T
Q  267 acggaatttaattatatacc 286  Q
    | ||||||| ||||||||||    
T  22536098 atggaattttattatatacc 22536117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 167 - 286
Target Start/End: Original strand, 25993919 - 25994038
Alignment:
Q  167 aaattgggggaaatgagaaattgaaagattgagtggtattgaatggaattggttccattgtgttccattgcattccatttacatcccatcaatccaaaca 266  Q
    |||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||  ||||||| |||||||| |||||||||||||||||||||    
T  25993919 aaattggggggaatgagaaattgaaggattgagtggtatagaatggaattggttccattgcattccattccattccatgtacatcccatcaatccaaaca 25994018  T
Q  267 acggaatttaattatatacc 286  Q
    | ||||||| ||||||||||    
T  25994019 atggaattttattatatacc 25994038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 108 - 157
Target Start/End: Original strand, 22531234 - 22531282
Alignment:
Q  108 agtagaggaagaggcaaataaaattgagggtagaatagtaacatttcaag 157  Q
    |||||||||||||||||||||||  |||||||||||||||| ||||||||    
T  22531234 agtagaggaagaggcaaataaaa-ggagggtagaatagtaaaatttcaag 22531282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 108 - 157
Target Start/End: Original strand, 22535919 - 22535967
Alignment:
Q  108 agtagaggaagaggcaaataaaattgagggtagaatagtaacatttcaag 157  Q
    |||||||||||||||||||||||  |||||||||||||||| ||||||||    
T  22535919 agtagaggaagaggcaaataaaa-ggagggtagaatagtaaaatttcaag 22535967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 108 - 157
Target Start/End: Original strand, 25993840 - 25993888
Alignment:
Q  108 agtagaggaagaggcaaataaaattgagggtagaatagtaacatttcaag 157  Q
    |||||||||||||||||||||||  |||||||||||||||| ||||||||    
T  25993840 agtagaggaagaggcaaataaaa-ggagggtagaatagtaaaatttcaag 25993888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 84; Significance: 8e-40; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 167 - 286
Target Start/End: Original strand, 13191744 - 13191863
Alignment:
Q  167 aaattgggggaaatgagaaattgaaagattgagtggtattgaatggaattggttccattgtgttccattgcattccatttacatcccatcaatccaaaca 266  Q
    |||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||  ||||||| |||||||| |||||||||||||||||||||    
T  13191744 aaattggggggaatgagaaattgaaggattgagtggtatagaatggaattggttccattgcattccattccattccatgtacatcccatcaatccaaaca 13191843  T
Q  267 acggaatttaattatatacc 286  Q
    | ||||||| ||||||||||    
T  13191844 atggaattttattatatacc 13191863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 108 - 157
Target Start/End: Original strand, 13191665 - 13191713
Alignment:
Q  108 agtagaggaagaggcaaataaaattgagggtagaatagtaacatttcaag 157  Q
    |||||||||||||||||||||||  |||||||||||||||| ||||||||    
T  13191665 agtagaggaagaggcaaataaaa-ggagggtagaatagtaaaatttcaag 13191713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 84; Significance: 8e-40; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 167 - 286
Target Start/End: Original strand, 20717613 - 20717732
Alignment:
Q  167 aaattgggggaaatgagaaattgaaagattgagtggtattgaatggaattggttccattgtgttccattgcattccatttacatcccatcaatccaaaca 266  Q
    |||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||  ||||||| |||||||| |||||||||||||||||||||    
T  20717613 aaattggggggaatgagaaattgaaggattgagtggtatagaatggaattggttccattgcattccattccattccatgtacatcccatcaatccaaaca 20717712  T
Q  267 acggaatttaattatatacc 286  Q
    | ||||||| ||||||||||    
T  20717713 atggaattttattatatacc 20717732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 108 - 157
Target Start/End: Original strand, 20717534 - 20717582
Alignment:
Q  108 agtagaggaagaggcaaataaaattgagggtagaatagtaacatttcaag 157  Q
    |||||||||||||||||||||||  |||||||||||||||| ||||||||    
T  20717534 agtagaggaagaggcaaataaaa-ggagggtagaatagtaaaatttcaag 20717582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 224
Target Start/End: Complemental strand, 28219133 - 28219076
Alignment:
Q  167 aaattgggggaaatgagaaattgaaagattgagtggtattgaatggaattggttccat 224  Q
    |||||||| | ||||| |||||||| || |||||||||||| ||||||| ||||||||    
T  28219133 aaattgggtggaatgaaaaattgaaggaatgagtggtattggatggaatgggttccat 28219076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 3e-33; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 167 - 286
Target Start/End: Complemental strand, 33091251 - 33091131
Alignment:
Q  167 aaattgggggaaatgagaaattgaaagattgagtggtattgaatggaattggttccattgtgttccattgcattccatttacat-cccatcaatccaaac 265  Q
    |||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||  ||||||| |||||||  ||||| |||||||||||||||    
T  33091251 aaattggggggaatgagaaattgaaggattgagtggtatagaatggaattggttccattgcattccattccattccacgtacatccccatcaatccaaac 33091152  T
Q  266 aacggaatttaattatatacc 286  Q
    || ||||||| ||||||||||    
T  33091151 aatggaattttattatatacc 33091131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 249
Target Start/End: Complemental strand, 10871339 - 10871257
Alignment:
Q  167 aaattgggggaaatgagaaattgaaagattgagtggtattgaatggaattggttccattgtgttccattgcattccatttaca 249  Q
    |||||| ||| ||||| || ||| |||| |||||||||||| ||| ||| ||||||||| ||||||||| ||||||| |||||    
T  10871339 aaattgaggggaatgaaaatttggaagagtgagtggtattggatgaaatgggttccattatgttccatttcattccaattaca 10871257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 108 - 157
Target Start/End: Complemental strand, 33091330 - 33091282
Alignment:
Q  108 agtagaggaagaggcaaataaaattgagggtagaatagtaacatttcaag 157  Q
    |||||||||||||||||||||||  |||||||||||||||| ||||||||    
T  33091330 agtagaggaagaggcaaataaaa-ggagggtagaatagtaaaatttcaag 33091282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 73; Significance: 3e-33; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 167 - 275
Target Start/End: Original strand, 31991654 - 31991762
Alignment:
Q  167 aaattgggggaaatgagaaattgaaagattgagtggtattgaatggaattggttccattgtgttccattgcattccatttacatcccatcaatccaaaca 266  Q
    |||||||||| |||||| ||||||| || |||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  31991654 aaattggggggaatgaggaattgaaggaatgagtggtatagaatggaattgattccattgtgttccattccattccatttacatctcatcaatccaaaca 31991753  T
Q  267 acggaattt 275  Q
    | |||||||    
T  31991754 atggaattt 31991762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 167 - 286
Target Start/End: Original strand, 30190831 - 30190940
Alignment:
Q  167 aaattgggggaaatgagaaattgaaagattgagtggtattgaatggaattggttccattgtgttccattgcattccatttacatcccatcaatccaaaca 266  Q
    |||||||||| |||||||||||||| ||||||||||||| |||||||||||          |||||||| |||||||| |||||||||||||||||||||    
T  30190831 aaattggggggaatgagaaattgaaggattgagtggtatagaatggaattg----------gttccattccattccatgtacatcccatcaatccaaaca 30190920  T
Q  267 acggaatttaattatatacc 286  Q
    | ||||||| ||||||||||    
T  30190921 atggaattttattatatacc 30190940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 167 - 245
Target Start/End: Complemental strand, 19337733 - 19337655
Alignment:
Q  167 aaattgggggaaatgagaaattgaaagattgagtggtattgaatggaattggttccattgtgttccattgcattccatt 245  Q
    ||||| |||| | ||| |||||||| |||||||||||||  ||||| |||| ||||||||||||||||| |||||||||    
T  19337733 aaattagggggattgaaaaattgaaggattgagtggtatataatggcattgattccattgtgttccatttcattccatt 19337655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 108 - 157
Target Start/End: Original strand, 30190752 - 30190800
Alignment:
Q  108 agtagaggaagaggcaaataaaattgagggtagaatagtaacatttcaag 157  Q
    |||||||||||||||||||||||  |||||||||||||||| ||||||||    
T  30190752 agtagaggaagaggcaaataaaa-ggagggtagaatagtaaaatttcaag 30190800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 108 - 157
Target Start/End: Original strand, 31991576 - 31991624
Alignment:
Q  108 agtagaggaagaggcaaataaaattgagggtagaatagtaacatttcaag 157  Q
    ||||||||||||| |||||||||| |||||||||||||||| ||||||||    
T  31991576 agtagaggaagagacaaataaaat-gagggtagaatagtaatatttcaag 31991624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 167 - 286
Target Start/End: Original strand, 49368392 - 49368515
Alignment:
Q  167 aaattgggggaaatgagaaattgaaagattgagtggtattgaatggaattggttccattgtgttccattgcattccatttacatc----ccatcaatcca 262  Q
    |||||||||  |||||||||||||| ||||||||||||| ||||||||||||||||||||  ||||||| |||||||| ||||||    |||||||||||    
T  49368392 aaattggggagaatgagaaattgaaggattgagtggtatagaatggaattggttccattgcattccattccattccatgtacatccattccatcaatcca 49368491  T
Q  263 aacaacggaatttaattatatacc 286  Q
    ||||| ||||||| ||||||||||    
T  49368492 aacaatggaattttattatatacc 49368515  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 167 - 286
Target Start/End: Complemental strand, 20983343 - 20983235
Alignment:
Q  167 aaattgggggaaatgagaaattgaaagattgagtggtattgaatggaattggttccattgtgttccattgcattccatttacatcccatcaatccaaaca 266  Q
    |||||||||| ||| |||||||||| ||||||||||||| |||||||||||          ||| |||||||||||| || |||||||||||||||||||    
T  20983343 aaattggggggaataagaaattgaaggattgagtggtatagaatggaattg----------gtttcattgcattcca-ttccatcccatcaatccaaaca 20983255  T
Q  267 acggaatttaattatatacc 286  Q
    | ||||||| ||||||||||    
T  20983254 atggaattttattatatacc 20983235  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 108 - 157
Target Start/End: Complemental strand, 20983422 - 20983374
Alignment:
Q  108 agtagaggaagaggcaaataaaattgagggtagaatagtaacatttcaag 157  Q
    |||||||||||||||||||||||  |||||||||||||||| ||||||||    
T  20983422 agtagaggaagaggcaaataaaa-ggagggtagaatagtaaaatttcaag 20983374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 108 - 157
Target Start/End: Original strand, 49368313 - 49368361
Alignment:
Q  108 agtagaggaagaggcaaataaaattgagggtagaatagtaacatttcaag 157  Q
    |||||||||||||||||||||||  |||||||||||||||| ||||||||    
T  49368313 agtagaggaagaggcaaataaaa-ggagggtagaatagtaaaatttcaag 49368361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 224
Target Start/End: Original strand, 42029299 - 42029356
Alignment:
Q  167 aaattgggggaaatgagaaattgaaagattgagtggtattgaatggaattggttccat 224  Q
    |||||||| | ||||| |||||||| || |||||||||||| ||||||| ||||||||    
T  42029299 aaattgggtggaatgaaaaattgaaggaatgagtggtattggatggaatgggttccat 42029356  T

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Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 184 - 313
Target Start/End: Complemental strand, 37664483 - 37664354
Alignment:
Q  184 aaattgaaagattgagtggtattgaatggaattggttccattgtgttccattgcattccatttacatcccatcaatccaaacaacggaatttaattatat 283  Q
    |||||||||||| ||||  ||||||||| ||||||||||||||| || |||| |||| |||||||||  ||||||| || ||||  |||| | |||||||    
T  37664483 aaattgaaagatcgagtaatattgaatgaaattggttccattgtatttcattccatttcatttacatttcatcaatgcatacaatagaatcttattatat 37664384  T
Q  284 accgttccattccaccacatcccatcaatc 313  Q
    | | || ||||||| || ||| ||||||||    
T  37664383 atcatttcattccatcatatctcatcaatc 37664354  T

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Target: scaffold0402 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0402
Description:

Target: scaffold0402; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 167 - 245
Target Start/End: Complemental strand, 795 - 717
Alignment:
Q  167 aaattgggggaaatgagaaattgaaagattgagtggtattgaatggaattggttccattgtgttccattgcattccatt 245  Q
    ||||| |||| | ||| |||||||| |||||||||||||  ||||| |||| ||||||||||||||||| |||||||||    
T  795 aaattagggggattgaaaaattgaaggattgagtggtatataatggcattgattccattgtgttccatttcattccatt 717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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