View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3237_low_48 (Length: 398)
Name: NF3237_low_48
Description: NF3237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3237_low_48 |
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Alignment Details
Target: chr6 (Bit Score: 336; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 10 - 378
Target Start/End: Original strand, 34835441 - 34835809
Alignment:
| Q |
10 |
aagaatatcacctggacgtcgtggaccgttattaattgtgttccaagcataatcaaatgtactcagcagttgagattctgtttgcaaagcatctcccttg |
109 |
Q |
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| T |
34835441 |
aagaatatcacccggacgccgtggaccgttattaattgtgttccaagcataatcaaatgtactcagcagttgagattctgtttgcaaagcatctcccttg |
34835540 |
T |
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| Q |
110 |
gtctgcatctgttcaacaaatgaatcaattgaaatcatcttgatcttaataaattgaagnnnnnnngtgtaaagcatgaaatgtacttacagaagcccat |
209 |
Q |
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| T |
34835541 |
gtctgcatctgttcaacaaatgaatcaattgaaatcatcttgatcttaataaattgaagaaaaaaagtgtaaagcatgaaatgtacttacagaagcccat |
34835640 |
T |
|
| Q |
210 |
ctataaacaattgggaaaccttgaagaaagatttcatgaaacaatgagtgtcccttttggttagaagattcaaatgaagaacaaccattacccaaatgag |
309 |
Q |
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| T |
34835641 |
ctataaacaattgggaaaccttgaagaaagatttcatgaaacaatgagtgtcccttttggtgagaagattcaaatgaagaacaaccattacccaaatgag |
34835740 |
T |
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| Q |
310 |
caccatttctaccataacattggagtcttgttctcacattatcaccttttcctagataaaccacaacta |
378 |
Q |
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| T |
34835741 |
caccatttctaccataacattggagtcttgttctcacattatcaccttttcctagataaaccacaacta |
34835809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 183 - 258
Target Start/End: Original strand, 34821372 - 34821447
Alignment:
| Q |
183 |
gcatgaaatgtacttacagaagcccatctataaacaattgggaaaccttgaagaaagatttcatgaaacaatgagt |
258 |
Q |
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| T |
34821372 |
gcatgaagtgtacttacagaagcccatctataaacaattgggaacccttgaaaaatgatctcatgaaacaatgagt |
34821447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 190 - 379
Target Start/End: Complemental strand, 35335534 - 35335345
Alignment:
| Q |
190 |
atgtacttacagaagcccatctataaacaattgggaaaccttgaagaaagatttcatgaaacaatgagtgtcccttttggttagaagattcaaatgaaga |
289 |
Q |
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| T |
35335534 |
atgtacttacaggagcccatctataaacaattgggaagccttgtgaaaatatctcctgaaacaatgaccttcccgttcgcagagaagagtcatctgacat |
35335435 |
T |
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| Q |
290 |
acaaccattacccaaatgagcaccatttctaccataacattggagtcttgttctcacattatcaccttttcctagataaaccacaactat |
379 |
Q |
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| T |
35335434 |
acaagtgttactcaaatgagctccattcctgccataacgctggagtcttgctctcacattgtcagcttttccaaggtaaaccacaactat |
35335345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 44 - 125
Target Start/End: Complemental strand, 35336366 - 35336285
Alignment:
| Q |
44 |
attgtgttccaagcataatcaaatgtactcagcagttgagattctgtttgcaaagcatctcccttggtctgcatctgttcaa |
125 |
Q |
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||||||||||| ||||||||||||||||| ||||| || ||||||||| || |||||||||| | ||||||||||||| |
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| T |
35336366 |
attgtgttccatgcataatcaaatgtactaagcagctgtgattctgttctcagggcatctccctcattttgcatctgttcaa |
35336285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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