View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3237_low_49 (Length: 395)

Name: NF3237_low_49
Description: NF3237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3237_low_49
NF3237_low_49
[»] chr1 (3 HSPs)
chr1 (12-381)||(48148640-48149009)
chr1 (74-228)||(31032734-31032893)
chr1 (74-193)||(1270209-1270333)
[»] chr8 (2 HSPs)
chr8 (64-222)||(4794130-4794292)
chr8 (74-145)||(36473086-36473158)
[»] chr7 (4 HSPs)
chr7 (178-222)||(10485213-10485257)
chr7 (74-166)||(23991987-23992084)
chr7 (80-145)||(17611932-17611998)
chr7 (178-222)||(41405860-41405904)
[»] chr3 (4 HSPs)
chr3 (74-193)||(1561292-1561416)
chr3 (80-193)||(521807-521925)
chr3 (182-222)||(37109300-37109340)
chr3 (89-193)||(50612926-50613035)
[»] chr2 (5 HSPs)
chr2 (70-193)||(3810302-3810430)
chr2 (74-193)||(35323512-35323636)
chr2 (65-193)||(25414951-25415084)
chr2 (74-145)||(41464936-41465008)
chr2 (80-191)||(13686033-13686149)
[»] chr5 (4 HSPs)
chr5 (74-191)||(228063-228185)
chr5 (103-144)||(5481443-5481485)
chr5 (81-193)||(3456790-3456907)
chr5 (178-234)||(41326594-41326650)
[»] chr6 (1 HSPs)
chr6 (101-193)||(12607124-12607221)
[»] chr4 (1 HSPs)
chr4 (89-140)||(37674052-37674104)


Alignment Details
Target: chr1 (Bit Score: 314; Significance: 1e-177; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 12 - 381
Target Start/End: Complemental strand, 48149009 - 48148640
Alignment:
Q  12 agagattagtcttcatatttatgaaaatgctatttctaatgagagagataaacataacgaaattttccagacacaattgacaagtgtttattgcatgatt 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| ||||||||||||||||||||    
T  48149009 agagattagtcttcatatttatgaaaatgctatttctaatgagagagataaacataacgaaaatttccatacacaattggcaagtgtttattgcatgatt 48148910  T
Q  112 tattattcactttttatttttcagccacatctccattgtggaaaatagtgcattggaattaattggtctttattcttgaagagattgtgacactcttttt 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||| |||||||||    
T  48148909 tattattcactttttatttttcagccacatctccattgtggaaaatagtgcattgggattgactggtctttattcttgaagagattgtgatactcttttt 48148810  T
Q  212 ctagagatataacattgttcttatatttaacataaaacacgtctcgaatatgattattttcatgaaaaaacatgtgaaaagaaattaccattaaagcgtc 311  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||| |||||||||||     
T  48148809 ctagagatataacactgttcttatatttaacataaaacacgtctcgaatatgattattttcatggagaaacatatgaaaagaaattatcattaaagcgtt 48148710  T
Q  312 tcatgcaaatgagcaacataaattgcgaaaaactacctcttgcaatagaagattggagaaattggttagt 381  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48148709 tcatgcaaacgagcaacataaattgcgaaaaactacctcttgcaatagaagattggagaaattggttagt 48148640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 74 - 228
Target Start/End: Original strand, 31032734 - 31032893
Alignment:
Q  74 ttttccagacacaattgacaagtgtttattgcatgattta-ttattcactttttatttttcagccacatctcc----attgtggaaaatagtgcattgga 168  Q
    ||||| ||| ||| ||||||||| || ||||||||||||| || |||||||| ||||||||||||||| ||||    | ||||| |||||||||||||      
T  31032734 ttttcaagatacagttgacaagttttaattgcatgatttatttgttcactttctatttttcagccacacctccttgaactgtggcaaatagtgcattgtg 31032833  T
Q  169 attaattggtctttattcttgaagagattgtgacactctttttctagagatataacattg 228  Q
    ||| | || ||||||||||||||||  |  |||   | ||||||||||||||||||||||    
T  31032834 attgactgatctttattcttgaagaattcttgatgatatttttctagagatataacattg 31032893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 74 - 193
Target Start/End: Complemental strand, 1270333 - 1270209
Alignment:
Q  74 ttttccagacacaattgacaagtgtttattgcatgatttatt-attcactttttatttttcagccacatctcc----attgtggaaaatagtgcattgga 168  Q
    ||||| ||||||| ||||||||| || |||||| |||||||| ||||||||  ||||||||||||||| || |    ||||||| |||||||||||||      
T  1270333 ttttcaagacacagttgacaagttttaattgcacgatttatttattcacttcctatttttcagccacaccttcttgaattgtggcaaatagtgcattgag 1270234  T
Q  169 attaattggtctttattcttgaaga 193  Q
    |||  ||| ||||||||||||||||    
T  1270233 attggttgctctttattcttgaaga 1270209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 64 - 222
Target Start/End: Complemental strand, 4794292 - 4794130
Alignment:
Q  64 cataacgaaattttccagacacaattgacaagtgtttattgcatgatttattattcactttttatttttcagccacatctcc----attgtggaaaatag 159  Q
    |||||||||||||||| ||||||  || ||| ||||||||||||  |||||| |||||||  |||||||  |||| | ||||    ||||||| ||||||    
T  4794292 cataacgaaattttcccgacacagctggcaaatgtttattgcattgtttattgttcacttcctattttttggccaaacctccatatattgtggcaaatag 4794193  T
Q  160 tgcattggaattaattggtctttattcttgaagagattgtgacactctttttctagagatata 222  Q
    |||||||  |||   || | ||||||||||||||||||||||  ||   ||||||||||||||    
T  4794192 tgcattgtgattggctgctatttattcttgaagagattgtgatgcttcctttctagagatata 4794130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 145
Target Start/End: Original strand, 36473086 - 36473158
Alignment:
Q  74 ttttccagacacaattgacaagtgtttattgcatgattta-ttattcactttttatttttcagccacatctcc 145  Q
    ||||| |||||||||||  |||| || ||||||||||||| || |||||||  ||||||||||||||| ||||    
T  36473086 ttttcaagacacaattggtaagttttaattgcatgatttatttgttcacttcctatttttcagccacacctcc 36473158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 178 - 222
Target Start/End: Complemental strand, 10485257 - 10485213
Alignment:
Q  178 tctttattcttgaagagattgtgacactctttttctagagatata 222  Q
    |||||||||||||||| |||| |||||||||||||||||||||||    
T  10485257 tctttattcttgaagaaattgggacactctttttctagagatata 10485213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 74 - 166
Target Start/End: Original strand, 23991987 - 23992084
Alignment:
Q  74 ttttccagacacaattgacaagtgtttattgcatgat-ttattattcactttttatttttcagccacatctcc----attgtggaaaatagtgcattg 166  Q
    ||||| |||||||| |||||||| || |||||||||| || || |||||||| ||||||||||||||| ||||    ||||||| |||||||||||||    
T  23991987 ttttcaagacacaactgacaagttttaattgcatgatatttttgttcactttctatttttcagccacacctccttgaattgtggcaaatagtgcattg 23992084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 145
Target Start/End: Complemental strand, 17611998 - 17611932
Alignment:
Q  80 agacacaattgacaagtgtttattgcatgatttatt-attcactttttatttttcagccacatctcc 145  Q
    |||||||| |||||||| || |||| |||||||||| ||||||||  ||||||| ||||||||||||    
T  17611998 agacacaactgacaagttttaattgtatgatttatttattcacttcctattttttagccacatctcc 17611932  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 222
Target Start/End: Original strand, 41405860 - 41405904
Alignment:
Q  178 tctttattcttgaagagattgtgacactctttttctagagatata 222  Q
    ||||||||||||||||||| |||| | || |||||||||||||||    
T  41405860 tctttattcttgaagagatcgtgatattccttttctagagatata 41405904  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 74 - 193
Target Start/End: Original strand, 1561292 - 1561416
Alignment:
Q  74 ttttccagacacaattgacaagtgtttattgcatgatttatta-ttcactttttatttttcagccacatctcc----attgtggaaaatagtgcattgga 168  Q
    |||| ||||||||  |||||||| |  |||||||||||||||  |||||||  ||||||||||||||| ||||    ||||||| |||||||||||||      
T  1561292 tttttcagacacagctgacaagtttcaattgcatgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaaatagtgcattgtg 1561391  T
Q  169 attaattggtctttattcttgaaga 193  Q
    |||  ||| ||||||||||||||||    
T  1561392 attggttgctctttattcttgaaga 1561416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 80 - 193
Target Start/End: Original strand, 521807 - 521925
Alignment:
Q  80 agacacaattgacaagtgtttattgcatgattta-ttattcactttttatttttcagccacatctcc----attgtggaaaatagtgcattggaattaat 174  Q
    ||||||| ||| ||||| || ||||||||||||| || |||||||  ||||||||||||||| ||||    ||||||| |||||||||||||  |||       
T  521807 agacacagttgtcaagttttaattgcatgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggc 521906  T
Q  175 tggtctttattcttgaaga 193  Q
    || ||||||||||||||||    
T  521907 tgctctttattcttgaaga 521925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 182 - 222
Target Start/End: Complemental strand, 37109340 - 37109300
Alignment:
Q  182 tattcttgaagagattgtgacactctttttctagagatata 222  Q
    |||||||||||| || |||| ||||||||||||||||||||    
T  37109340 tattcttgaagaaatcgtgatactctttttctagagatata 37109300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 89 - 193
Target Start/End: Original strand, 50612926 - 50613035
Alignment:
Q  89 tgacaagtgtttattgcatgatttatta-ttcactttttatttttcagccacatctcc----attgtggaaaatagtgcattggaattaattggtcttta 183  Q
    |||||||| || ||||||| |||||||  |||||||| |||||||||| |||| ||||    ||||||| |||||||||||||  |||   || ||||||    
T  50612926 tgacaagttttaattgcataatttatttgttcactttatatttttcagtcacacctccttgaattgtggcaaatagtgcattgtgattggctgctcttta 50613025  T
Q  184 ttcttgaaga 193  Q
    ||||||||||    
T  50613026 ttcttgaaga 50613035  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 70 - 193
Target Start/End: Original strand, 3810302 - 3810430
Alignment:
Q  70 gaaattttccagacacaattgacaagtgtttattgcatgattta-ttattcactttttatttttcagccacatctcc----attgtggaaaatagtgcat 164  Q
    ||||||||| |||||||  || ||||| || ||||||||||||| || ||||||| ||||||||||| |||| ||||    ||||||| |||||||||||    
T  3810302 gaaattttcaagacacagctggcaagttttaattgcatgatttatttgttcacttcttatttttcagtcacacctccttgaattgtggcaaatagtgcat 3810401  T
Q  165 tggaattaattggtctttattcttgaaga 193  Q
    || ||||   |  ||||||||||||||||    
T  3810402 tgtaattggctactctttattcttgaaga 3810430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 74 - 193
Target Start/End: Original strand, 35323512 - 35323636
Alignment:
Q  74 ttttccagacacaattgacaagtgtttattgcatgatttat-tattcactttttatttttcagccacatctc----cattgtggaaaatagtgcattgga 168  Q
    |||| |||||||| ||||||||| || ||| |||||||||| | |||| ||||||||||||||||||| |||     ||||||| |||||||| ||||      
T  35323512 tttttcagacacagttgacaagttttaattacatgatttatatgttcagtttttatttttcagccacacctcattgaattgtggcaaatagtgtattgtg 35323611  T
Q  169 attaattggtctttattcttgaaga 193  Q
    ||| | || ||||||||||||||||    
T  35323612 attgactgttctttattcttgaaga 35323636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 193
Target Start/End: Complemental strand, 25415084 - 25414951
Alignment:
Q  65 ataacgaaattttccagacacaattgacaagtgtttattgcatgatttatta-ttcactttttatttttcagccacatctcc----attgtggaaaatag 159  Q
    |||| ||| ||||| |||||||  ||| |||| || |||||||||||||||  |||||||| | ||||||||||| | ||||    ||||||| ||||||    
T  25415084 ataaagaatttttcaagacacagctgataagttttaattgcatgatttatttgttcactttctttttttcagccatacctccttgaattgtggcaaatag 25414985  T
Q  160 tgcattggaattaattggtctttattcttgaaga 193  Q
    |||||||  ||| | || ||||||||||||||||    
T  25414984 tgcattgtgattgactgttctttattcttgaaga 25414951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 145
Target Start/End: Original strand, 41464936 - 41465008
Alignment:
Q  74 ttttccagacacaattgacaagtgtttattgcatgattta-ttattcactttttatttttcagccacatctcc 145  Q
    ||||| ||||||| ||||||||| || ||||||||||||| || |||||||| ||||||||| ||||| ||||    
T  41464936 ttttcaagacacagttgacaagttttaattgcatgatttatttgttcactttctatttttcaaccacacctcc 41465008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 80 - 191
Target Start/End: Complemental strand, 13686149 - 13686033
Alignment:
Q  80 agacacaattgacaagtgtttattgcatgattta-ttattcactttttatttttcagccacatctcc----attgtggaaaatagtgcattggaattaat 174  Q
    ||||||||||| ||||| || ||||||||||||| || |||||||  ||||||||||||||| ||||    ||||||| || ||||||||||  |||       
T  13686149 agacacaattggcaagttttaattgcatgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaagtagtgcattgtgattggc 13686050  T
Q  175 tggtctttattcttgaa 191  Q
    || ||||||||||||||    
T  13686049 tgctctttattcttgaa 13686033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 74 - 191
Target Start/End: Complemental strand, 228185 - 228063
Alignment:
Q  74 ttttccagacacaattgacaagtgtttattgcatgatttatta-ttcactttttatttttcagccacatctcc----attgtggaaaatagtgcattgga 168  Q
    ||||| |||||||| | |||||| || |||||||||| ||||  |||||||| || ||||||| |||| ||||    ||||||| |||||||||||||      
T  228185 ttttcaagacacaacttacaagttttaattgcatgatatatttgttcactttctacttttcagtcacacctccttgaattgtggtaaatagtgcattgtg 228086  T
Q  169 attaattggtctttattcttgaa 191  Q
    ||| |||| ||||||||||||||    
T  228085 attgattgttctttattcttgaa 228063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 144
Target Start/End: Complemental strand, 5481485 - 5481443
Alignment:
Q  103 tgcatgatttatta-ttcactttttatttttcagccacatctc 144  Q
    |||||||||||||  ||||||||||||||||||||||||||||    
T  5481485 tgcatgatttatttgttcactttttatttttcagccacatctc 5481443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 193
Target Start/End: Complemental strand, 3456907 - 3456790
Alignment:
Q  81 gacacaattgacaagtgtttattgcatgattta-ttattcactttttatttttcagccacatctcc----attgtggaaaatagtgcattggaattaatt 175  Q
    |||||||  ||||||| || ||||||||||||| || |||||||  |||||||||| |||| ||||    ||||||| |||||||||||||  | | | |    
T  3456907 gacacaaccgacaagttttaattgcatgatttatttgttcacttcctatttttcagtcacacctccttgaattgtggcaaatagtgcattgtgagtgact 3456808  T
Q  176 ggtctttattcttgaaga 193  Q
    | ||||||||||||||||    
T  3456807 gctctttattcttgaaga 3456790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 234
Target Start/End: Original strand, 41326594 - 41326650
Alignment:
Q  178 tctttattcttgaagagattgtgacactctttttctagagatataacattgttctta 234  Q
    ||||||||||||||||||| ||||   | |||||||||||||||| ||||| |||||    
T  41326594 tctttattcttgaagagatcgtgatgttatttttctagagatatagcattgctctta 41326650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 193
Target Start/End: Original strand, 12607124 - 12607221
Alignment:
Q  101 attgcatgatttatta-ttcactttttatttttcagccacatctcc----attgtggaaaatagtgcattggaattaattggtctttattcttgaaga 193  Q
    |||||||||||||||  |||||||| |||||||||| |||| ||||    ||||||| |||||||||| ||  ||| | || ||||||||||||||||    
T  12607124 attgcatgatttatttgttcactttctatttttcagtcacacctccttaaattgtggcaaatagtgcactgtgattgactgctctttattcttgaaga 12607221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 89 - 140
Target Start/End: Original strand, 37674052 - 37674104
Alignment:
Q  89 tgacaagtgtttattgcatgatttatta-ttcactttttatttttcagccaca 140  Q
    |||||||| || |||||||||||||||  || |||||||||||||||||||||    
T  37674052 tgacaagttttaattgcatgatttatttgttaactttttatttttcagccaca 37674104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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