View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3237_low_63 (Length: 352)

Name: NF3237_low_63
Description: NF3237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3237_low_63
NF3237_low_63
[»] chr1 (1 HSPs)
chr1 (14-352)||(11216035-11216370)


Alignment Details
Target: chr1 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 14 - 352
Target Start/End: Complemental strand, 11216370 - 11216035
Alignment:
Q  14 tgataggacatttctcacaaattaaagtagtctcaatcctacctttaatagttgtggttaccaccatgggtgaaaacattgatgataattttagcatgaa 113  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  11216370 tgatagggcatttctcacaaattaaagtagtctcaatcctacctttaatagttgtggttaccaccatgggttaaaacattgatgataattttagcatgaa 11216271  T
Q  114 tcatcaaaagcaattgaaagaaatgaagaagttcattattgctctacggtcaaataccatagacactaattgttgattaatgtaacacatacccgcgaat 213  Q
    || ||||||||||||||||||||||||| ||||||||   ||||||  |||||||||||||||||||||||||||||||||||||||||||||||  |||    
T  11216270 tcgtcaaaagcaattgaaagaaatgaaggagttcatt---gctctattgtcaaataccatagacactaattgttgattaatgtaacacatacccgtaaat 11216174  T
Q  214 agttcatttttgccttagctttccttgcctccaaagtgcaaactctacatgtgattgacacattggcagtggcagagctcttaatgggcgtaattgggcc 313  Q
    |||||||||||||| || ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  11216173 agttcatttttgccgtaactttccttgtctccaaagtgcaaactctacatgtggttgacacattggcagtggcagagctcttaatgggcgtaattgggcc 11216074  T
Q  314 acgaaccaccgccaaaagcaacataaaagtttgttatat 352  Q
    |||| ||||||||||||| || |||||||||||||||||    
T  11216073 acgacccaccgccaaaagaaaaataaaagtttgttatat 11216035  T

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