View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3237_low_67 (Length: 346)
Name: NF3237_low_67
Description: NF3237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3237_low_67 |
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Alignment Details
Target: chr8 (Bit Score: 113; Significance: 4e-57; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 3 - 127
Target Start/End: Complemental strand, 8714693 - 8714569
Alignment:
| Q |
3 |
tttctaatgccaagaaaccaaaagtgtcaaactcaaatgacgagaaaacatgttaactatccgatcatgttttcacatgtttggctggctactttgtttg |
102 |
Q |
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| T |
8714693 |
tttctaatgccaagaaaccaaaagtgtcaaactcaaatgacgagaaaacatgttaactatccgatcatgttttcacatgattggctggctactttgtttg |
8714594 |
T |
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| Q |
103 |
acgcagctttgagagcttaccattc |
127 |
Q |
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| T |
8714593 |
acgcggctttgagagcttactattc |
8714569 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 121 - 166
Target Start/End: Complemental strand, 8713261 - 8713216
Alignment:
| Q |
121 |
accattctttgtcatccgatttcaccttggtcaatgctaatagcac |
166 |
Q |
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| T |
8713261 |
accattctttgtcatccgatttcaccttggacaatgctaatagcac |
8713216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 207 - 246
Target Start/End: Complemental strand, 8713168 - 8713129
Alignment:
| Q |
207 |
ccaccattttgtttgggtatatttttcattttagcctctt |
246 |
Q |
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| T |
8713168 |
ccaccattttgtttgggtatatttttcattttagcctctt |
8713129 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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