View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3237_low_69 (Length: 341)
Name: NF3237_low_69
Description: NF3237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3237_low_69 |
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Alignment Details
Target: chr2 (Bit Score: 149; Significance: 1e-78; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 8 - 168
Target Start/End: Complemental strand, 3003205 - 3003045
Alignment:
| Q |
8 |
cagcacagaccacctattgaataatgcagaagcatgtaataataaactcaaacataacaaaaatatttaagacaagaaagtaaagcaataaactttatcc |
107 |
Q |
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| T |
3003205 |
cagcacacaccacctattgaataatgcagaagcatgtaataataaactcaaacaaaacaaaaatatttaagacaagaaagtaaagcaataaactttatcc |
3003106 |
T |
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| Q |
108 |
aaatttgcaggaaaaataaaaatacccaaccatgaaagcaaacgccacgtgtaaattagtc |
168 |
Q |
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| T |
3003105 |
aaatttgcaggaaaaataaaaatacacaaccatgaaagcaaacgccacgtgtaaattagtc |
3003045 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 267 - 325
Target Start/End: Complemental strand, 3002938 - 3002880
Alignment:
| Q |
267 |
gaagtaactaaacttaaactaacccgcatcgatcacagagttgagctaggtcaccagtg |
325 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3002938 |
gaagtaactaaactaaaactaacccgcatcgatcacagagttgagctaggtcaccagtg |
3002880 |
T |
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