View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3237_low_70 (Length: 341)

Name: NF3237_low_70
Description: NF3237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3237_low_70
NF3237_low_70
[»] chr4 (3 HSPs)
chr4 (131-251)||(51462467-51462587)
chr4 (244-326)||(51464827-51464909)
chr4 (30-103)||(51462390-51462463)
[»] chr2 (1 HSPs)
chr2 (30-107)||(25894147-25894223)
[»] scaffold0037 (1 HSPs)
scaffold0037 (47-107)||(108230-108290)
[»] chr7 (1 HSPs)
chr7 (30-107)||(29541376-29541453)
[»] chr8 (1 HSPs)
chr8 (79-107)||(25234555-25234583)
[»] chr6 (1 HSPs)
chr6 (79-107)||(5988197-5988225)
[»] chr5 (1 HSPs)
chr5 (81-109)||(17765645-17765673)


Alignment Details
Target: chr4 (Bit Score: 97; Significance: 1e-47; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 131 - 251
Target Start/End: Original strand, 51462467 - 51462587
Alignment:
Q  131 actaagttttcccatcttgaaatacctatagtattttgcgagacaccatatctttatcaacaaatggaccctaaatatatttctcgacagaaggatttga 230  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||||| |||||| ||||||||||    
T  51462467 actaagttttcccatctagaaatacctatagtgttttgcgagacaccatatctttacccacaaatggaccctaaatatatttttcgacacaaggatttga 51462566  T
Q  231 aaatttgagacagagacgccg 251  Q
    |||||||||||||||||||||    
T  51462567 aaatttgagacagagacgccg 51462587  T

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Target: chr4; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 244 - 326
Target Start/End: Original strand, 51464827 - 51464909
Alignment:
Q  244 agacgccgaatgatacttttgaaagattatgattgtttaatcatgtatcatcatagaaaggcaaaaatggttgttgatgcttt 326  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51464827 agacgccgaatgatacttttgaaagattatgattgtttaatcatgtatcatcatagaaaggcaaaaatggttgttgatgcttt 51464909  T

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Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 30 - 103
Target Start/End: Original strand, 51462390 - 51462463
Alignment:
Q  30 aacaagttttatgttggaaagctatagagagctatcgctccctagcccgtgtgggatcaatatctttttatact 103  Q
    |||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||||||||||| ||||    
T  51462390 aacaagttttatgttggaaagctatagagagctataactccctatcccgtgtgggatcaatatctttttttact 51462463  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 30 - 107
Target Start/End: Complemental strand, 25894223 - 25894147
Alignment:
Q  30 aacaagttttatgttggaaagctatagagagctatcgctccctagcccgtgtgggatcaatatctttttatactataa 107  Q
    |||||||||| || | ||||||||||||||||||| |||||| | ||  |||||||||||||||||||||||||||||    
T  25894223 aacaagttttctgctagaaagctatagagagctatagctcccaatcca-tgtgggatcaatatctttttatactataa 25894147  T

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Target: scaffold0037 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 47 - 107
Target Start/End: Original strand, 108230 - 108290
Alignment:
Q  47 aaagctatagagagctatcgctccctagcccgtgtgggatcaatatctttttatactataa 107  Q
    |||||||||||||||||| || |||||| || ||||||||| ||||||||||||| |||||    
T  108230 aaagctatagagagctatagccccctagtccatgtgggatcgatatctttttatattataa 108290  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 107
Target Start/End: Complemental strand, 29541453 - 29541376
Alignment:
Q  30 aacaagttttatgttggaaagctatagagagctatcgctccctagcccgtgtgggatcaatatctttttatactataa 107  Q
    ||||| |||| | |||||||||||||| |||||||  |||||||| |  |||| || | |||||||||||||||||||    
T  29541453 aacaaattttctattggaaagctatagggagctataactccctagtctctgtgagaccgatatctttttatactataa 29541376  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 79 - 107
Target Start/End: Original strand, 25234555 - 25234583
Alignment:
Q  79 tgtgggatcaatatctttttatactataa 107  Q
    |||||||||||||||||||||||||||||    
T  25234555 tgtgggatcaatatctttttatactataa 25234583  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 79 - 107
Target Start/End: Complemental strand, 5988225 - 5988197
Alignment:
Q  79 tgtgggatcaatatctttttatactataa 107  Q
    |||||||||||||||||||||||||||||    
T  5988225 tgtgggatcaatatctttttatactataa 5988197  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 109
Target Start/End: Original strand, 17765645 - 17765673
Alignment:
Q  81 tgggatcaatatctttttatactataata 109  Q
    |||||||||||||||||||||||||||||    
T  17765645 tgggatcaatatctttttatactataata 17765673  T

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