View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3237_low_73 (Length: 335)

Name: NF3237_low_73
Description: NF3237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3237_low_73
NF3237_low_73
[»] chr1 (1 HSPs)
chr1 (18-329)||(5131392-5131703)
[»] chr5 (8 HSPs)
chr5 (230-288)||(8547085-8547143)
chr5 (223-284)||(8678831-8678892)
chr5 (222-328)||(9004463-9004569)
chr5 (223-284)||(8645323-8645384)
chr5 (222-288)||(2873484-2873550)
chr5 (243-288)||(8530044-8530089)
chr5 (222-285)||(1599251-1599314)
chr5 (103-155)||(8637669-8637721)
[»] chr7 (2 HSPs)
chr7 (226-285)||(35780937-35780996)
chr7 (222-288)||(48360801-48360867)
[»] chr6 (1 HSPs)
chr6 (226-306)||(16717424-16717504)
[»] chr4 (1 HSPs)
chr4 (243-288)||(9444205-9444250)
[»] scaffold0627 (1 HSPs)
scaffold0627 (226-328)||(5711-5810)


Alignment Details
Target: chr1 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 18 - 329
Target Start/End: Original strand, 5131392 - 5131703
Alignment:
Q  18 gcacgaattcacaacttgaaaactatcatgatctggattgcaagcaatataaaccctttctttacccaccattactttctgattctttttctccaaagct 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  5131392 gcacgaattcacaacttgaaaactatcatgatctggattgcaagcaatataaaccctttctttacccaccattactttcttattctttttctccaaagct 5131491  T
Q  118 aatctcacagcccgatgagggcgtttggatttattctcaatctcgtctcttttctccctgatcgatttagcatcatgaagaggaagcttaaatataggct 217  Q
    ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  5131492 aatctcacagcccgaagagggtgtttggatttattctcaatctcgtctcttttctccctgatcgatttagcatcacgaagaggaagcttaaatataggct 5131591  T
Q  218 ccagcttaatgggaagtttaagcaaaatgtgggcagtgaggtgtgatggaagattatcaaaataagggcaacatgcattactttttgccccttcatcttt 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5131592 ccagcttaatgggaagtttaagcaaaatgtgggcagtgaggtgtgatggaagattatcaaaataagggcaacatgcattactttttgccccttcatcttt 5131691  T
Q  318 cccctttgcttc 329  Q
    ||| ||||||||    
T  5131692 cccttttgcttc 5131703  T

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Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 230 - 288
Target Start/End: Complemental strand, 8547143 - 8547085
Alignment:
Q  230 gaagtttaagcaaaatgtgggcagtgaggtgtgatggaagattatcaaaataagggcaa 288  Q
    |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||    
T  8547143 gaagtttaagcagaatgtgggcagtgaggtgagatggaagattatcaaaataagggcaa 8547085  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 223 - 284
Target Start/End: Original strand, 8678831 - 8678892
Alignment:
Q  223 ttaatgggaagtttaagcaaaatgtgggcagtgaggtgtgatggaagattatcaaaataagg 284  Q
    ||||||||||| | |||||||||||||||| ||| ||||||||||||||||||||| |||||    
T  8678831 ttaatgggaagatgaagcaaaatgtgggcaatgatgtgtgatggaagattatcaaagtaagg 8678892  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 222 - 328
Target Start/End: Original strand, 9004463 - 9004569
Alignment:
Q  222 cttaatgggaagtttaagcaaaatgtgggcagtgaggtgtgatggaagattatcaaaataagggcaacatgcattactttttgccccttcatctttcccc 321  Q
    |||||||||||| | ||||| |||||||  ||||||||| |||||||||||| |||| |||||||||  | ||| ||||| |||| | ||| |||||||     
T  9004463 cttaatgggaagatgaagcagaatgtggttagtgaggtgagatggaagattagcaaagtaagggcaaagttcatgactttctgcctcatcaactttccct 9004562  T
Q  322 tttgctt 328  Q
    |||||||    
T  9004563 tttgctt 9004569  T

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Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 223 - 284
Target Start/End: Original strand, 8645323 - 8645384
Alignment:
Q  223 ttaatgggaagtttaagcaaaatgtgggcagtgaggtgtgatggaagattatcaaaataagg 284  Q
    ||||||||||| | |||||| ||||||||| ||| ||||||||||||||||||||| |||||    
T  8645323 ttaatgggaagatgaagcaacatgtgggcaatgatgtgtgatggaagattatcaaagtaagg 8645384  T

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Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 288
Target Start/End: Complemental strand, 2873550 - 2873484
Alignment:
Q  222 cttaatgggaagtttaagcaaaatgtgggcagtgaggtgtgatggaagattatcaaaataagggcaa 288  Q
    |||||||||||||| ||| | |||||||| ||| | ||| ||||||||||||||||| |||||||||    
T  2873550 cttaatgggaagttgaagaagaatgtgggtagttaagtgagatggaagattatcaaagtaagggcaa 2873484  T

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Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 243 - 288
Target Start/End: Original strand, 8530044 - 8530089
Alignment:
Q  243 aatgtgggcagtgaggtgtgatggaagattatcaaaataagggcaa 288  Q
    |||||||||||||||||| || ||||| ||||||||||||||||||    
T  8530044 aatgtgggcagtgaggtgagacggaagtttatcaaaataagggcaa 8530089  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 222 - 285
Target Start/End: Complemental strand, 1599314 - 1599251
Alignment:
Q  222 cttaatgggaagtttaagcaaaatgtgggcagtgaggtgtgatggaagattatcaaaataaggg 285  Q
    |||||| ||||||| ||||| |||| ||||||||| ||| |||| ||||||||||||| |||||    
T  1599314 cttaataggaagttgaagcagaatgcgggcagtgacgtgagatgaaagattatcaaaaaaaggg 1599251  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 103 - 155
Target Start/End: Original strand, 8637669 - 8637721
Alignment:
Q  103 tttttctccaaagctaatctcacagcccgatgagggcgtttggatttattctc 155  Q
    ||||||||||||||||||||| |||| |||  |||||| |||| |||||||||    
T  8637669 tttttctccaaagctaatctcgcagcacgaatagggcgcttgggtttattctc 8637721  T

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Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 226 - 285
Target Start/End: Original strand, 35780937 - 35780996
Alignment:
Q  226 atgggaagtttaagcaaaatgtgggcagtgaggtgtgatggaagattatcaaaataaggg 285  Q
    |||||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  35780937 atgggaagttgaagcaaaatgtgggcggtgaggtgggatggaagattatcaaaataaggg 35780996  T

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Target: chr7; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 222 - 288
Target Start/End: Complemental strand, 48360867 - 48360801
Alignment:
Q  222 cttaatgggaagtttaagcaaaatgtgggcagtgaggtgtgatggaagattatcaaaataagggcaa 288  Q
    |||||||||||||| ||| | ||||||||||||||||||  ||||||||||||||||||||||||||    
T  48360867 cttaatgggaagttgaaggagaatgtgggcagtgaggtgatatggaagattatcaaaataagggcaa 48360801  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 226 - 306
Target Start/End: Original strand, 16717424 - 16717504
Alignment:
Q  226 atgggaagtttaagcaaaatgtgggcagtgaggtgtgatggaagattatcaaaataagggcaacatgcattactttttgcc 306  Q
    |||||||||| ||||||||||||||| |||||||| ||||||||| ||||||||||  ||| |||| ||| ||||| ||||    
T  16717424 atgggaagttgaagcaaaatgtgggcggtgaggtgggatggaagaatatcaaaatagtggcgacattcatcactttctgcc 16717504  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 243 - 288
Target Start/End: Original strand, 9444205 - 9444250
Alignment:
Q  243 aatgtgggcagtgaggtgtgatggaagattatcaaaataagggcaa 288  Q
    |||||||||||||||||| || ||||||||||||||||||||||||    
T  9444205 aatgtgggcagtgaggtgagacggaagattatcaaaataagggcaa 9444250  T

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Target: scaffold0627 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 328
Target Start/End: Original strand, 5711 - 5810
Alignment:
Q  226 atgggaagtttaagcaaaatgtgggcagtgaggtgtgatggaagattatcaaaataagggcaacatgcattactttttgccccttcatctttcccctttg 325  Q
    |||||||||| ||| |||||||| |  |||||||| ||||||||| |||||||||||   |||||| ||| ||||| |||| | ||| ||||||| ||||    
T  5711 atgggaagttgaagaaaaatgtgagtggtgaggtgggatggaagaatatcaaaataa---caacattcatgactttctgcctcctcaactttcccttttg 5807  T

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