View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3237_low_75 (Length: 327)
Name: NF3237_low_75
Description: NF3237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3237_low_75 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 11 - 327
Target Start/End: Original strand, 31090115 - 31090431
Alignment:
| Q |
11 |
atgaacctgtatagttctggtagcgaattcaacaccaatggtagatttagattcaagacaaaactcatttcgggtaaacctagagagaatattggatttt |
110 |
Q |
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| T |
31090115 |
atgaacctgtatagttctggtagcgaattcaacaccaatggtagatttagattcaagacaaaactcatttcgggtaaacctagagagaatattggatttt |
31090214 |
T |
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| Q |
111 |
ccaacaccagaatctccaatgagtacaatcttgaacagataatcatattcattatctactttgtatgccatcttatgttattttatttatttccaatacc |
210 |
Q |
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| T |
31090215 |
ccaacaccagaatctccaatgagtacaatcttgaacagataatcatattcattatctactttgtatgccatcttatgttattttatttatttccaatacc |
31090314 |
T |
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| Q |
211 |
ggatcgacaccaccaatacctatcccatatcaaattgtatattctcaaaaatgtcaaatactaaagagnnnnnnncctatcaaagtaaaatatgagagat |
310 |
Q |
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| T |
31090315 |
ggatcgacaccaccaatacctatcccatatcaaattgtatattctcaaaaatgtcaaatactaaagagaaaaaaacctagcaaagtaaaatatgagagat |
31090414 |
T |
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| Q |
311 |
gaattatgaaactaacc |
327 |
Q |
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| T |
31090415 |
gaattatgaaactaacc |
31090431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 67; Significance: 9e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 24 - 162
Target Start/End: Original strand, 24249409 - 24249547
Alignment:
| Q |
24 |
gttctggtagcgaattcaacaccaatggtagatttagattcaagacaaaactcatttcgggtaaacctagagagaatattggattttccaacaccagaat |
123 |
Q |
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| T |
24249409 |
gttctggtggcgaattcaacaccaatagtagatttagactccaaacaaaactcatttctagtaaacctagagagaatgttggatttaccaacaccagaat |
24249508 |
T |
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| Q |
124 |
ctccaatgagtacaatcttgaacagataatcatattcat |
162 |
Q |
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| T |
24249509 |
ccccgatcaaaacgatcttgaacaagtaatcatactcat |
24249547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 30 - 160
Target Start/End: Original strand, 188551 - 188681
Alignment:
| Q |
30 |
gtagcgaattcaacaccaatggtagatttagattcaagacaaaactcatttcgggtaaacctagagagaatattggattttccaacaccagaatctccaa |
129 |
Q |
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| T |
188551 |
gtagcgaattcaacgccaatagtagacttggactcaagacaaaattcattgcgagtgaatcgggatagaagatttgatttaccaacaccagaatcgccta |
188650 |
T |
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| Q |
130 |
tgagtacaatcttgaacagataatcatattc |
160 |
Q |
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| T |
188651 |
tcagtactaccttgaacagataatcgtattc |
188681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 25 - 162
Target Start/End: Original strand, 4374981 - 4375118
Alignment:
| Q |
25 |
ttctggtagcgaattcaacaccaatggtagatttagattcaagacaaaactcatttcgggtaaacctagagagaatattggattttccaacaccagaatc |
124 |
Q |
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| T |
4374981 |
ttctggttgcaaattcaaccccaatggtggatttagattcaaggctaaattcattttttgtgaatctcgacaaaaggttggattttccaacaccagaatc |
4375080 |
T |
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| Q |
125 |
tccaatgagtacaatcttgaacagataatcatattcat |
162 |
Q |
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| T |
4375081 |
accaatcaacacaaccttaaacagataatcataatcat |
4375118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 118
Target Start/End: Complemental strand, 31789510 - 31789422
Alignment:
| Q |
30 |
gtagcgaattcaacaccaatggtagatttagattcaagacaaaactcatttcgggtaaacctagagagaatattggattttccaacacc |
118 |
Q |
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| T |
31789510 |
gtagcgaattcaacaccaatggtggatttggattcaagattgaactcgtttttggtgaaacgagagagaagatttgatttaccaacacc |
31789422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 64
Target Start/End: Complemental strand, 35195765 - 35195729
Alignment:
| Q |
28 |
tggtagcgaattcaacaccaatggtagatttagattc |
64 |
Q |
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| T |
35195765 |
tggtagcgaattcaacaccaatagtagatttagattc |
35195729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 82
Target Start/End: Original strand, 34834465 - 34834511
Alignment:
| Q |
36 |
aattcaacaccaatggtagatttagattcaagacaaaactcatttcg |
82 |
Q |
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| T |
34834465 |
aattcaactccaatggtagatttagactccaaacaaaactcatttcg |
34834511 |
T |
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