View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3237_low_77 (Length: 318)

Name: NF3237_low_77
Description: NF3237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3237_low_77
NF3237_low_77
[»] chr2 (1 HSPs)
chr2 (19-312)||(3088531-3088824)


Alignment Details
Target: chr2 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 19 - 312
Target Start/End: Complemental strand, 3088824 - 3088531
Alignment:
Q  19 cttggaggaggagtgtcacatctttgtcatagtaatctgctaatgctgtgagaataatttctctgtcccacaccttataagcataaacaagaaaaacaaa 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3088824 cttggaggaggagtgtcacatctttgtcatagtaatctgctaatgctgtgagaataatttctctgtcccacaccttataagcataaacaagaaaaacaaa 3088725  T
Q  119 aatgtcacatgaagaaattatatctgactcaatttccttcagcatgaagaatctaaaattcgcttaacaaagttgttttgtaaatccgtatgctagtaac 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||    
T  3088724 aatgtcacatgaagaaattatatctgactcaatttccttcagcatgaagaatctaaaattcgcttaacgaagttgttttgtaaatctgtatgctagtaac 3088625  T
Q  219 aaattttttgcttacatgatgcagattagatttgtgccgataccagcgtagatcaatcgtgtttccacctttgtctgaggtgaatccaacgtgc 312  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3088624 atattttttgcttacatgatgcagattagatttgtgccgataccagcgtagatcaatcgtgtttccacctttgtctgaggtgaatccaacgtgc 3088531  T

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