View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3237_low_80 (Length: 311)

Name: NF3237_low_80
Description: NF3237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3237_low_80
NF3237_low_80
[»] scaffold0138 (2 HSPs)
scaffold0138 (250-305)||(28732-28787)
scaffold0138 (250-305)||(40728-40783)
[»] chr8 (6 HSPs)
chr8 (250-305)||(16182768-16182823)
chr8 (250-305)||(24755043-24755098)
chr8 (250-305)||(19260265-19260321)
chr8 (250-305)||(20466768-20466824)
chr8 (250-305)||(11605203-11605258)
chr8 (250-305)||(30644059-30644114)
[»] chr4 (3 HSPs)
chr4 (250-305)||(12569360-12569415)
chr4 (250-305)||(15122570-15122626)
chr4 (265-305)||(20616907-20616947)
[»] chr7 (6 HSPs)
chr7 (250-304)||(12186292-12186346)
chr7 (250-305)||(17138845-17138901)
chr7 (250-305)||(14125800-14125856)
chr7 (250-305)||(14429196-14429252)
chr7 (268-304)||(15704389-15704425)
chr7 (263-303)||(9446916-9446956)
[»] scaffold0375 (1 HSPs)
scaffold0375 (250-305)||(175-230)
[»] scaffold0029 (1 HSPs)
scaffold0029 (250-297)||(9591-9638)
[»] chr2 (3 HSPs)
chr2 (250-305)||(23027878-23027933)
chr2 (250-305)||(40622994-40623050)
chr2 (254-305)||(45678917-45678968)
[»] chr1 (5 HSPs)
chr1 (254-305)||(6151184-6151235)
chr1 (250-305)||(21021916-21021972)
chr1 (250-305)||(22835821-22835876)
chr1 (250-305)||(18182885-18182940)
chr1 (250-305)||(22832108-22832163)
[»] chr5 (3 HSPs)
chr5 (250-304)||(18770718-18770772)
chr5 (250-304)||(22031603-22031657)
chr5 (250-297)||(23571434-23571481)
[»] chr3 (10 HSPs)
chr3 (250-305)||(15067026-15067082)
chr3 (250-305)||(855411-855466)
chr3 (250-305)||(15051166-15051222)
chr3 (250-305)||(16368735-16368791)
chr3 (250-305)||(16700961-16701017)
chr3 (263-303)||(11558143-11558183)
chr3 (263-303)||(11567412-11567452)
chr3 (250-305)||(18382850-18382906)
chr3 (250-305)||(16909217-16909274)
chr3 (250-305)||(18384663-18384719)
[»] scaffold0114 (1 HSPs)
scaffold0114 (250-305)||(6579-6634)
[»] chr6 (4 HSPs)
chr6 (250-305)||(21740752-21740807)
chr6 (250-291)||(15895154-15895195)
chr6 (254-305)||(18906385-18906437)
chr6 (263-303)||(27554328-27554368)
[»] scaffold0311 (1 HSPs)
scaffold0311 (254-305)||(7892-7944)
[»] scaffold0080 (3 HSPs)
scaffold0080 (254-305)||(19435-19487)
scaffold0080 (250-305)||(56168-56224)
scaffold0080 (250-305)||(33249-33305)
[»] scaffold0819 (1 HSPs)
scaffold0819 (250-305)||(1467-1524)
[»] scaffold0042 (1 HSPs)
scaffold0042 (250-291)||(35701-35742)
[»] scaffold0005 (1 HSPs)
scaffold0005 (250-305)||(281379-281434)
[»] scaffold0210 (1 HSPs)
scaffold0210 (263-305)||(22624-22666)
[»] scaffold0393 (1 HSPs)
scaffold0393 (250-305)||(803-859)
[»] scaffold0158 (1 HSPs)
scaffold0158 (263-305)||(2188-2230)
[»] scaffold1868 (1 HSPs)
scaffold1868 (250-305)||(1206-1262)
[»] scaffold0676 (1 HSPs)
scaffold0676 (250-305)||(3765-3821)
[»] scaffold0550 (1 HSPs)
scaffold0550 (262-298)||(6802-6838)


Alignment Details
Target: scaffold0138 (Bit Score: 52; Significance: 8e-21; HSPs: 2)
Name: scaffold0138
Description:

Target: scaffold0138; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 250 - 305
Target Start/End: Complemental strand, 28787 - 28732
Alignment:
Q  250 agacaatttatgattttgaattaactccgctgcgatgattgagatattttcttgga 305  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  28787 agacaatttatgattttgaattaactccgctgcgatgattgagatattttgttgga 28732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0138; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 250 - 305
Target Start/End: Complemental strand, 40783 - 40728
Alignment:
Q  250 agacaatttatgattttgaattaactccgctgcgatgattgagatattttcttgga 305  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  40783 agacaatttatgattttgaattaactccgctgcgatgattgagatattttgttgga 40728  T

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Target: chr8 (Bit Score: 52; Significance: 8e-21; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 250 - 305
Target Start/End: Complemental strand, 16182823 - 16182768
Alignment:
Q  250 agacaatttatgattttgaattaactccgctgcgatgattgagatattttcttgga 305  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  16182823 agacaatttatgattttgaattaactccgctgcgatgattgagatattttgttgga 16182768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 250 - 305
Target Start/End: Complemental strand, 24755098 - 24755043
Alignment:
Q  250 agacaatttatgattttgaattaactccgctgcgatgattgagatattttcttgga 305  Q
    ||||||||||||||||||||||||||||  |||||||||||||||||||| |||||    
T  24755098 agacaatttatgattttgaattaactccattgcgatgattgagatattttgttgga 24755043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 250 - 305
Target Start/End: Original strand, 19260265 - 19260321
Alignment:
Q  250 agacaatttatgatttt-gaattaactccgctgcgatgattgagatattttcttgga 305  Q
    ||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||    
T  19260265 agacaatttatgatttttgaattaactccgctgcgatgattgaaatattttgttgga 19260321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 250 - 305
Target Start/End: Original strand, 20466768 - 20466824
Alignment:
Q  250 agacaatttatgatttt-gaattaactccgctgcgatgattgagatattttcttgga 305  Q
    ||||||||||||||||| |||||||||||||| |||||||||||||||||| |||||    
T  20466768 agacaatttatgatttttgaattaactccgctacgatgattgagatattttgttgga 20466824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 250 - 305
Target Start/End: Complemental strand, 11605258 - 11605203
Alignment:
Q  250 agacaatttatgattttgaattaactccgctgcgatgattgagatattttcttgga 305  Q
    ||||||||||||| |||  ||||||||||||||||||||||||||||||| |||||    
T  11605258 agacaatttatgacttttgattaactccgctgcgatgattgagatattttgttgga 11605203  T

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Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 250 - 305
Target Start/End: Original strand, 30644059 - 30644114
Alignment:
Q  250 agacaatttatgattttgaattaactccgctgcgatgattgagatattttcttgga 305  Q
    |||||||||||||||||||| ||||| ||||||||||||| ||||||||| |||||    
T  30644059 agacaatttatgattttgaaataacttcgctgcgatgattaagatattttgttgga 30644114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 8e-21; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 250 - 305
Target Start/End: Complemental strand, 12569415 - 12569360
Alignment:
Q  250 agacaatttatgattttgaattaactccgctgcgatgattgagatattttcttgga 305  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  12569415 agacaatttatgattttgaattaactccgctgcgatgattgagatattttgttgga 12569360  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 250 - 305
Target Start/End: Original strand, 15122570 - 15122626
Alignment:
Q  250 agacaatttatgatttt-gaattaactccgctgcgatgattgagatattttcttgga 305  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||    
T  15122570 agacaatttatgatttttgaattaactccgctgcgatgattgagatattttgttgga 15122626  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 265 - 305
Target Start/End: Original strand, 20616907 - 20616947
Alignment:
Q  265 ttgaattaactccgctgcgatgattgagatattttcttgga 305  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  20616907 ttgaattaactccgctgcgatgattgagatattttgttgga 20616947  T

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Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 250 - 304
Target Start/End: Complemental strand, 12186346 - 12186292
Alignment:
Q  250 agacaatttatgattttgaattaactccgctgcgatgattgagatattttcttgg 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  12186346 agacaatttatgattttgaattaactccgctgcgatgattgagatattttgttgg 12186292  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 250 - 305
Target Start/End: Original strand, 17138845 - 17138901
Alignment:
Q  250 agacaatttatgatttt-gaattaactccgctgcgatgattgagatattttcttgga 305  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||    
T  17138845 agacaatttatgatttttgaattaactccgctgcgatgattgagatattttgttgga 17138901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 250 - 305
Target Start/End: Complemental strand, 14125856 - 14125800
Alignment:
Q  250 agacaatttatgattttgaattaactccgctgcga-tgattgagatattttcttgga 305  Q
    |||||||||||||||||||| |||||||||||||| ||||| ||||||||| |||||    
T  14125856 agacaatttatgattttgaaataactccgctgcgattgattaagatattttgttgga 14125800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 250 - 305
Target Start/End: Complemental strand, 14429252 - 14429196
Alignment:
Q  250 agacaatttatgattttgaattaactccgctgcga-tgattgagatattttcttgga 305  Q
    |||||||||||||||||||| |||||||||||||| ||||| ||||||||| |||||    
T  14429252 agacaatttatgattttgaaataactccgctgcgattgattaagatattttgttgga 14429196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 304
Target Start/End: Original strand, 15704389 - 15704425
Alignment:
Q  268 aattaactccgctgcgatgattgagatattttcttgg 304  Q
    |||||||||||||||||||||||||||||||| ||||    
T  15704389 aattaactccgctgcgatgattgagatattttgttgg 15704425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 263 - 303
Target Start/End: Original strand, 9446916 - 9446956
Alignment:
Q  263 ttttgaattaactccgctgcgatgattgagatattttcttg 303  Q
    |||||||||||||||||||| ||| || |||||||||||||    
T  9446916 ttttgaattaactccgctgcaatgtttaagatattttcttg 9446956  T

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Target: scaffold0375 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0375
Description:

Target: scaffold0375; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 250 - 305
Target Start/End: Original strand, 175 - 230
Alignment:
Q  250 agacaatttatgattttgaattaactccgctgcgatgattgagatattttcttgga 305  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  175 agacaatttatgattttcaattaactccgctgcgatgattgagatattttgttgga 230  T

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Target: scaffold0029 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 250 - 297
Target Start/End: Complemental strand, 9638 - 9591
Alignment:
Q  250 agacaatttatgattttgaattaactccgctgcgatgattgagatatt 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  9638 agacaatttatgattttgaattaactccgctgcgatgattgagatatt 9591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 250 - 305
Target Start/End: Original strand, 23027878 - 23027933
Alignment:
Q  250 agacaatttatgattttgaattaactccgctgcgatgattgagatattttcttgga 305  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  23027878 agacaatttatgattttgaattaacttcgctgcgatgattgagatattttgttgga 23027933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 250 - 305
Target Start/End: Original strand, 40622994 - 40623050
Alignment:
Q  250 agacaatttatgatttt-gaattaactccgctgcgatgattgagatattttcttgga 305  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||    
T  40622994 agacaatttatgatttttgaattaactccgctgcgatgattgagatattttgttgga 40623050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 254 - 305
Target Start/End: Original strand, 45678917 - 45678968
Alignment:
Q  254 aatttatgattttgaattaactccgctgcgatgattgagatattttcttgga 305  Q
    |||||||||||||||||||||||||||||||||||||  ||||||| |||||    
T  45678917 aatttatgattttgaattaactccgctgcgatgattgtaatattttgttgga 45678968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 254 - 305
Target Start/End: Complemental strand, 6151235 - 6151184
Alignment:
Q  254 aatttatgattttgaattaactccgctgcgatgattgagatattttcttgga 305  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  6151235 aatttatgattttgaattaactccgctgcgatgattgagatattttgttgga 6151184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 250 - 305
Target Start/End: Complemental strand, 21021972 - 21021916
Alignment:
Q  250 agacaatttatgatttt-gaattaactccgctgcgatgattgagatattttcttgga 305  Q
    ||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||    
T  21021972 agacaatttatgatttttgaattaactccgctgcgatgattgaaatattttgttgga 21021916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 250 - 305
Target Start/End: Original strand, 22835821 - 22835876
Alignment:
Q  250 agacaatttatgattttgaattaactccgctgcgatgattgagatattttcttgga 305  Q
    ||||||||||||| |||  ||||||||||||||||||||||||||||||| |||||    
T  22835821 agacaatttatgacttttgattaactccgctgcgatgattgagatattttgttgga 22835876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 250 - 305
Target Start/End: Original strand, 18182885 - 18182940
Alignment:
Q  250 agacaatttatgattttgaattaactccgctgcgatgattgagatattttcttgga 305  Q
    |||||| ||||||||||||| |||||||| |||||||||| ||||||||| |||||    
T  18182885 agacaacttatgattttgaaataactccgttgcgatgattaagatattttgttgga 18182940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 250 - 305
Target Start/End: Original strand, 22832108 - 22832163
Alignment:
Q  250 agacaatttatgattttgaattaactccgctgcgatgattgagatattttcttgga 305  Q
    ||||||||||||| |||  |||||||| |||||||||||||||||||||| |||||    
T  22832108 agacaatttatgacttttgattaactctgctgcgatgattgagatattttgttgga 22832163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 8e-18; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 250 - 304
Target Start/End: Original strand, 18770718 - 18770772
Alignment:
Q  250 agacaatttatgattttgaattaactccgctgcgatgattgagatattttcttgg 304  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  18770718 agacactttatgattttgaattaactccgctgcgatgattgagatattttgttgg 18770772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 250 - 304
Target Start/End: Complemental strand, 22031657 - 22031603
Alignment:
Q  250 agacaatttatgattttgaattaactccgctgcgatgattgagatattttcttgg 304  Q
    |||||||||||||||||||||||| ||||||||||||||| ||||||||| ||||    
T  22031657 agacaatttatgattttgaattaaatccgctgcgatgattaagatattttgttgg 22031603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 250 - 297
Target Start/End: Complemental strand, 23571481 - 23571434
Alignment:
Q  250 agacaatttatgattttgaattaactccgctgcgatgattgagatatt 297  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||||||    
T  23571481 agacaatttatgattttgaattaactctgcttcgatgattgagatatt 23571434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 250 - 305
Target Start/End: Complemental strand, 15067082 - 15067026
Alignment:
Q  250 agacaatttatgatttt-gaattaactccgctgcgatgattgagatattttcttgga 305  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||    
T  15067082 agacaatttatgatttttgaattaactccgctgcgatgattgagatattttgttgga 15067026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 250 - 305
Target Start/End: Complemental strand, 855466 - 855411
Alignment:
Q  250 agacaatttatgattttgaattaactccgctgcgatgattgagatattttcttgga 305  Q
    ||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||    
T  855466 agacaatttatgattttaaattaactccggtgcgatgattgagatattttgttgga 855411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 250 - 305
Target Start/End: Complemental strand, 15051222 - 15051166
Alignment:
Q  250 agacaatttatgatttt-gaattaactccgctgcgatgattgagatattttcttgga 305  Q
    |||||||| |||||||| ||||||||||||||||||||||||||||||||| |||||    
T  15051222 agacaattaatgatttttgaattaactccgctgcgatgattgagatattttgttgga 15051166  T

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Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 250 - 305
Target Start/End: Complemental strand, 16368791 - 16368735
Alignment:
Q  250 agacaatttatgatttt-gaattaactccgctgcgatgattgagatattttcttgga 305  Q
    ||||||||||||||||| |||||||||| |||||||||||||||||||||| |||||    
T  16368791 agacaatttatgatttttgaattaactctgctgcgatgattgagatattttgttgga 16368735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 250 - 305
Target Start/End: Original strand, 16700961 - 16701017
Alignment:
Q  250 agacaatttatgatttt-gaattaactccgctgcgatgattgagatattttcttgga 305  Q
    |||||||||| |||||| |||||||||||||| |||||||||||||||||| |||||    
T  16700961 agacaatttaggatttttgaattaactccgcttcgatgattgagatattttattgga 16701017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 303
Target Start/End: Original strand, 11558143 - 11558183
Alignment:
Q  263 ttttgaattaactccgctgcgatgattgagatattttcttg 303  Q
    |||||||||||||||||||| ||| ||||||||||||||||    
T  11558143 ttttgaattaactccgctgcaatgtttgagatattttcttg 11558183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 303
Target Start/End: Original strand, 11567412 - 11567452
Alignment:
Q  263 ttttgaattaactccgctgcgatgattgagatattttcttg 303  Q
    |||||||||||||||||||| ||| ||||||||||||||||    
T  11567412 ttttgaattaactccgctgcaatgtttgagatattttcttg 11567452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 305
Target Start/End: Complemental strand, 18382906 - 18382850
Alignment:
Q  250 agacaatttatgattttgaattaactccgctgcga-tgattgagatattttcttgga 305  Q
    ||||||||||| |||||||| |||||||||||||| ||||| ||||||||| |||||    
T  18382906 agacaatttataattttgaaataactccgctgcgattgattaagatattttgttgga 18382850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 305
Target Start/End: Complemental strand, 16909274 - 16909217
Alignment:
Q  250 agacaatttatgattttg--aattaactccgctgcgatgattgagatattttcttgga 305  Q
    |||||||||||||||||   ||||||||| |||||||||| ||||||||||| |||||    
T  16909274 agacaatttatgatttttgaaattaactctgctgcgatgactgagatattttgttgga 16909217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 305
Target Start/End: Original strand, 18384663 - 18384719
Alignment:
Q  250 agacaatttatgattttgaattaactccgctgcga-tgattgagatattttcttgga 305  Q
    ||||||||||| |||||||| |||||| ||||||| ||||| ||||||||| |||||    
T  18384663 agacaatttataattttgaaataactctgctgcgattgattaagatattttgttgga 18384719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 250 - 305
Target Start/End: Complemental strand, 6634 - 6579
Alignment:
Q  250 agacaatttatgattttgaattaactccgctgcgatgattgagatattttcttgga 305  Q
    |||||||||||||||||||||||||| | ||||||||||||||||||||| |||||    
T  6634 agacaatttatgattttgaattaactacactgcgatgattgagatattttgttgga 6579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 250 - 305
Target Start/End: Original strand, 21740752 - 21740807
Alignment:
Q  250 agacaatttatgattttgaattaactccgctgcgatgattgagatattttcttgga 305  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||||| |||||    
T  21740752 agacaatttatgatttttgattaactccgctgcgatgattgagatattttgttgga 21740807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 250 - 291
Target Start/End: Original strand, 15895154 - 15895195
Alignment:
Q  250 agacaatttatgattttgaattaactccgctgcgatgattga 291  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  15895154 agacaatttatgattttgaattaactccgctgcgatgattga 15895195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 254 - 305
Target Start/End: Complemental strand, 18906437 - 18906385
Alignment:
Q  254 aatttatgatttt-gaattaactccgctgcgatgattgagatattttcttgga 305  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||| |||||    
T  18906437 aatttatgatttttgaattaactccgctgcgatgattgagatattttgttgga 18906385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 263 - 303
Target Start/End: Original strand, 27554328 - 27554368
Alignment:
Q  263 ttttgaattaactccgctgcgatgattgagatattttcttg 303  Q
    |||||||||||||||||||| ||| || |||||||||||||    
T  27554328 ttttgaattaactccgctgcaatgtttaagatattttcttg 27554368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 254 - 305
Target Start/End: Original strand, 7892 - 7944
Alignment:
Q  254 aatttatgatttt-gaattaactccgctgcgatgattgagatattttcttgga 305  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||| |||||    
T  7892 aatttatgatttttgaattaactccgctgcgatgattgagatattttattgga 7944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0080 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: scaffold0080
Description:

Target: scaffold0080; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 254 - 305
Target Start/End: Original strand, 19435 - 19487
Alignment:
Q  254 aatttatgatttt-gaattaactccgctgcgatgattgagatattttcttgga 305  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||| |||||    
T  19435 aatttatgatttttgaattaactccgctgcgatgattgagatattttgttgga 19487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0080; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 250 - 305
Target Start/End: Original strand, 56168 - 56224
Alignment:
Q  250 agacaatttatgatttt-gaattaactccgctgcgatgattgagatattttcttgga 305  Q
    ||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||    
T  56168 agacaatttatgatttttgaattaactccgttgcgatgtttgagatattttcttgga 56224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0080; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 250 - 305
Target Start/End: Complemental strand, 33305 - 33249
Alignment:
Q  250 agacaatttatgatttt-gaattaactccgctgcgatgattgagatattttcttgga 305  Q
    ||||||||||||||||| |||||||| ||||||||||||| |||||||||| |||||    
T  33305 agacaatttatgatttttgaattaacgccgctgcgatgatcgagatattttgttgga 33249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0819 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0819
Description:

Target: scaffold0819; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 250 - 305
Target Start/End: Complemental strand, 1524 - 1467
Alignment:
Q  250 agacaatttatgattttg--aattaactccgctgcgatgattgagatattttcttgga 305  Q
    |||||||||||||||||   |||||||||||||||||||||||||||||||| |||||    
T  1524 agacaatttatgatttttgaaattaactccgctgcgatgattgagatattttgttgga 1467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 250 - 291
Target Start/End: Original strand, 35701 - 35742
Alignment:
Q  250 agacaatttatgattttgaattaactccgctgcgatgattga 291  Q
    ||||||||||||||||||||||||||||| ||||||||||||    
T  35701 agacaatttatgattttgaattaactccgttgcgatgattga 35742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 250 - 305
Target Start/End: Original strand, 281379 - 281434
Alignment:
Q  250 agacaatttatgattttgaattaactccgctgcgatgattgagatattttcttgga 305  Q
    ||||||||||||| |||  ||||||||||||||||||||||| ||||||| |||||    
T  281379 agacaatttatgacttttgattaactccgctgcgatgattgaaatattttgttgga 281434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0210 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0210
Description:

Target: scaffold0210; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 305
Target Start/End: Original strand, 22624 - 22666
Alignment:
Q  263 ttttgaattaactccgctgcgatgattgagatattttcttgga 305  Q
    ||||||| ||||||||||||||||||||||||||||| |||||    
T  22624 ttttgaaataactccgctgcgatgattgagatattttgttgga 22666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0393 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0393
Description:

Target: scaffold0393; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 305
Target Start/End: Complemental strand, 859 - 803
Alignment:
Q  250 agacaatttatgattttgaattaactccgctgcgat-gattgagatattttcttgga 305  Q
    ||||||||||| |||||||| ||||||||||||||| |||| ||||||||| |||||    
T  859 agacaatttataattttgaaataactccgctgcgatcgattaagatattttgttgga 803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0158 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0158
Description:

Target: scaffold0158; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 305
Target Start/End: Complemental strand, 2230 - 2188
Alignment:
Q  263 ttttgaattaactccgctgcgatgattgagatattttcttgga 305  Q
    |||||||||||||||| |||||||||||| ||||||| |||||    
T  2230 ttttgaattaactccgttgcgatgattgatatattttgttgga 2188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1868 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold1868
Description:

Target: scaffold1868; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 305
Target Start/End: Complemental strand, 1262 - 1206
Alignment:
Q  250 agacaatttatgattttgaattaactccgctgcga-tgattgagatattttcttgga 305  Q
    ||||||| ||| |||||||| |||||||||||||| ||||| ||||||||| |||||    
T  1262 agacaatgtataattttgaaataactccgctgcgattgattaagatattttgttgga 1206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0676 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0676
Description:

Target: scaffold0676; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 305
Target Start/End: Complemental strand, 3821 - 3765
Alignment:
Q  250 agacaatttatgattttgaattaactccgctgcga-tgattgagatattttcttgga 305  Q
    |||||||||||||||| ||| |||||| ||||||| ||||| ||||||||| |||||    
T  3821 agacaatttatgatttcgaaataactctgctgcgattgattaagatattttgttgga 3765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0550 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0550
Description:

Target: scaffold0550; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 262 - 298
Target Start/End: Complemental strand, 6838 - 6802
Alignment:
Q  262 attttgaattaactccgctgcgatgattgagatattt 298  Q
    ||||||||||||||||||||| ||| |||||||||||    
T  6838 attttgaattaactccgctgcaatgtttgagatattt 6802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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