View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3237_low_88 (Length: 289)
Name: NF3237_low_88
Description: NF3237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3237_low_88 |
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Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 18 - 282
Target Start/End: Complemental strand, 38748894 - 38748618
Alignment:
| Q |
18 |
aatgaattaacaaactgccacataccctcttttgcatgttactctcaaatgctacctagccacatacccccc-ttaccatcccttattcccatccttgtc |
116 |
Q |
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| T |
38748894 |
aatgaattaacaaactgccacataccctcttttgcatgttactctcaaatgctacctagccacatacccccccttaccatcccttattcccatccttgtc |
38748795 |
T |
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| Q |
117 |
accattttattttctctttctcaactcacactctctcctccctatataataactctctcaccccttctttccattcacaacatcgt-------cactctc |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
38748794 |
accattttattttctctttctcaactcacactctctcctccctatataataactctctcaccccttctttccattcacaacatcgtcacattacactctc |
38748695 |
T |
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| Q |
210 |
tctt----aacatttccacacctcatacttttattattatttgcacccccatttcacaatgactactatctgtgctg |
282 |
Q |
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|||| ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| ||||||| |
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| T |
38748694 |
tctttaacaacatttccacacctcatactcttattattatttgcaccctcatttcacaatgactactatttgtgctg |
38748618 |
T |
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