View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3237_low_9 (Length: 623)

Name: NF3237_low_9
Description: NF3237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3237_low_9
NF3237_low_9
[»] chr5 (38 HSPs)
chr5 (285-612)||(39777089-39777415)
chr5 (1-178)||(39776911-39777088)
chr5 (289-465)||(32743840-32744015)
chr5 (145-276)||(291100-291231)
chr5 (149-280)||(12913802-12913933)
chr5 (149-276)||(19655161-19655288)
chr5 (149-251)||(16971172-16971274)
chr5 (150-251)||(3899867-3899968)
chr5 (149-262)||(29699384-29699497)
chr5 (149-227)||(2953242-2953320)
chr5 (169-271)||(16439146-16439248)
chr5 (149-222)||(2093945-2094018)
chr5 (150-251)||(26662427-26662529)
chr5 (150-251)||(26934022-26934124)
chr5 (149-251)||(28818945-28819047)
chr5 (145-275)||(30117832-30117962)
chr5 (169-280)||(3180088-3180198)
chr5 (169-251)||(16802472-16802554)
chr5 (151-198)||(32485630-32485677)
chr5 (149-198)||(13312272-13312321)
chr5 (195-276)||(19598335-19598416)
chr5 (143-203)||(16439140-16439200)
chr5 (217-276)||(16971220-16971279)
chr5 (230-276)||(13312267-13312313)
chr5 (149-203)||(19598340-19598394)
chr5 (179-253)||(38134411-38134485)
chr5 (149-241)||(2356312-2356401)
chr5 (503-590)||(32743707-32743791)
chr5 (189-286)||(39031199-39031296)
chr5 (143-192)||(39031238-39031287)
chr5 (143-227)||(228402-228486)
chr5 (217-276)||(2953266-2953325)
chr5 (217-276)||(3899915-3899974)
chr5 (155-206)||(7009401-7009452)
chr5 (137-202)||(291092-291158)
chr5 (230-283)||(12913892-12913945)
chr5 (155-203)||(17849221-17849269)
chr5 (232-276)||(22083001-22083045)
[»] chr8 (28 HSPs)
chr8 (149-276)||(5033164-5033291)
chr8 (150-276)||(35440978-35441104)
chr8 (149-276)||(33841599-33841726)
chr8 (142-276)||(10086760-10086894)
chr8 (149-276)||(45191135-45191262)
chr8 (169-276)||(8243416-8243523)
chr8 (169-280)||(34229640-34229751)
chr8 (149-276)||(5667100-5667227)
chr8 (143-276)||(43844473-43844604)
chr8 (143-251)||(39850983-39851091)
chr8 (149-276)||(8796425-8796552)
chr8 (145-251)||(6296633-6296739)
chr8 (169-280)||(4958599-4958708)
chr8 (169-227)||(34541831-34541889)
chr8 (217-276)||(5033237-5033296)
chr8 (169-216)||(35031642-35031689)
chr8 (149-203)||(5033169-5033223)
chr8 (230-276)||(5667186-5667232)
chr8 (149-203)||(43844545-43844599)
chr8 (149-202)||(5667105-5667158)
chr8 (230-275)||(10086846-10086891)
chr8 (209-276)||(2581828-2581895)
chr8 (217-276)||(33841594-33841653)
chr8 (217-276)||(35440972-35441031)
chr8 (149-203)||(8243464-8243518)
chr8 (149-203)||(33841667-33841721)
chr8 (149-203)||(35441045-35441099)
chr8 (158-227)||(31159903-31159972)
[»] chr1 (45 HSPs)
chr1 (149-276)||(48993925-48994052)
chr1 (143-276)||(29179599-29179732)
chr1 (169-280)||(9157309-9157420)
chr1 (149-276)||(32540756-32540883)
chr1 (145-276)||(17127568-17127699)
chr1 (149-276)||(5995372-5995499)
chr1 (149-253)||(33219599-33219703)
chr1 (169-276)||(37155049-37155156)
chr1 (189-286)||(36290455-36290552)
chr1 (169-280)||(4608995-4609106)
chr1 (179-276)||(1091582-1091679)
chr1 (195-283)||(44706838-44706926)
chr1 (149-227)||(15220863-15220941)
chr1 (149-251)||(29371396-29371498)
chr1 (170-272)||(45728294-45728396)
chr1 (167-253)||(46333972-46334058)
chr1 (149-251)||(49444921-49445021)
chr1 (169-222)||(1819517-1819570)
chr1 (203-276)||(21630045-21630118)
chr1 (169-276)||(48498418-48498525)
chr1 (169-251)||(5694918-5694999)
chr1 (169-251)||(8337879-8337961)
chr1 (208-288)||(28395628-28395708)
chr1 (169-236)||(741530-741597)
chr1 (169-251)||(34062237-34062319)
chr1 (169-247)||(47303427-47303505)
chr1 (169-251)||(48604975-48605057)
chr1 (217-276)||(48993920-48993979)
chr1 (149-203)||(9157318-9157372)
chr1 (153-203)||(21630054-21630104)
chr1 (149-203)||(45728295-45728349)
chr1 (149-203)||(48993993-48994047)
chr1 (169-276)||(19711208-19711313)
chr1 (169-221)||(28928807-28928859)
chr1 (217-280)||(17127563-17127626)
chr1 (217-280)||(29371444-29371507)
chr1 (217-276)||(49444916-49444975)
chr1 (145-203)||(17127640-17127698)
chr1 (217-275)||(29179601-29179659)
chr1 (149-203)||(29179673-29179727)
chr1 (231-276)||(5995459-5995504)
chr1 (231-276)||(46932000-46932045)
chr1 (231-276)||(46932072-46932116)
chr1 (232-288)||(15220902-15220958)
chr1 (149-193)||(36290493-36290537)
[»] chr4 (40 HSPs)
chr4 (149-283)||(23444277-23444411)
chr4 (150-276)||(51265448-51265574)
chr4 (149-262)||(47661859-47661972)
chr4 (149-276)||(35682169-35682296)
chr4 (149-276)||(6271705-6271832)
chr4 (149-227)||(42375062-42375140)
chr4 (153-286)||(47762601-47762734)
chr4 (169-276)||(26186044-26186149)
chr4 (155-221)||(25818387-25818453)
chr4 (149-251)||(53954638-53954740)
chr4 (189-276)||(30861822-30861909)
chr4 (167-221)||(28693949-28694003)
chr4 (149-275)||(44379934-44380060)
chr4 (169-251)||(55090024-55090106)
chr4 (179-251)||(40789207-40789279)
chr4 (229-276)||(2325068-2325115)
chr4 (217-288)||(47661918-47661989)
chr4 (169-227)||(47404613-47404671)
chr4 (169-227)||(50384133-50384191)
chr4 (169-221)||(31430489-31430541)
chr4 (169-221)||(52028607-52028659)
chr4 (217-277)||(53954686-53954746)
chr4 (217-288)||(23444260-23444331)
chr4 (143-193)||(5048886-5048936)
chr4 (149-203)||(26186090-26186144)
chr4 (220-282)||(44380009-44380071)
chr4 (217-277)||(35682242-35682302)
chr4 (245-280)||(25617980-25618015)
chr4 (217-276)||(42375086-42375145)
chr4 (178-221)||(45591447-45591490)
chr4 (214-276)||(3862619-3862681)
chr4 (149-203)||(3862622-3862676)
chr4 (214-276)||(3871376-3871438)
chr4 (149-203)||(3871379-3871433)
chr4 (149-203)||(23444345-23444399)
chr4 (230-276)||(30709989-30710035)
chr4 (149-203)||(51265453-51265507)
chr4 (169-218)||(24006098-24006147)
chr4 (251-288)||(54716349-54716386)
chr4 (169-261)||(31532717-31532809)
[»] chr7 (27 HSPs)
chr7 (149-276)||(11016872-11016999)
chr7 (149-276)||(38975808-38975935)
chr7 (169-276)||(41018256-41018363)
chr7 (160-273)||(15027548-15027661)
chr7 (153-276)||(4290548-4290671)
chr7 (149-251)||(42628323-42628425)
chr7 (199-276)||(45231908-45231985)
chr7 (152-216)||(48000705-48000769)
chr7 (149-221)||(48000795-48000867)
chr7 (169-276)||(34854723-34854830)
chr7 (195-282)||(30217508-30217594)
chr7 (169-251)||(4649348-4649432)
chr7 (179-276)||(27028831-27028928)
chr7 (158-216)||(6225542-6225600)
chr7 (181-251)||(10419486-10419556)
chr7 (230-276)||(11016958-11017004)
chr7 (195-261)||(22764754-22764820)
chr7 (179-251)||(7671949-7672021)
chr7 (149-188)||(34854786-34854825)
chr7 (149-188)||(41018319-41018358)
chr7 (169-212)||(41084208-41084251)
chr7 (217-276)||(42628371-42628430)
chr7 (149-203)||(11016877-11016931)
chr7 (169-251)||(29053342-29053424)
chr7 (149-203)||(38975813-38975867)
chr7 (231-273)||(48000827-48000869)
chr7 (231-276)||(38975895-38975940)
[»] chr3 (25 HSPs)
chr3 (149-276)||(30734410-30734537)
chr3 (169-280)||(33689175-33689286)
chr3 (155-276)||(47492061-47492182)
chr3 (143-276)||(51046075-51046208)
chr3 (149-276)||(41752967-41753094)
chr3 (169-283)||(43139737-43139851)
chr3 (149-275)||(50524706-50524832)
chr3 (173-280)||(55223231-55223338)
chr3 (149-251)||(1801454-1801556)
chr3 (169-262)||(50549992-50550085)
chr3 (149-212)||(45103117-45103180)
chr3 (217-280)||(30734401-30734464)
chr3 (169-251)||(30476502-30476584)
chr3 (149-275)||(30580764-30580890)
chr3 (169-251)||(47677283-47677365)
chr3 (173-241)||(29031746-29031814)
chr3 (155-227)||(30904296-30904368)
chr3 (167-273)||(18321657-18321763)
chr3 (149-203)||(33689184-33689238)
chr3 (199-251)||(39385746-39385798)
chr3 (137-203)||(50549970-50550037)
chr3 (231-276)||(1801449-1801494)
chr3 (149-193)||(18321659-18321703)
chr3 (143-203)||(30580832-30580892)
chr3 (252-280)||(47677263-47677291)
[»] scaffold0586 (1 HSPs)
scaffold0586 (149-280)||(7055-7185)
[»] chr2 (26 HSPs)
chr2 (149-276)||(16514427-16514554)
chr2 (149-276)||(29508698-29508826)
chr2 (149-241)||(14229361-14229453)
chr2 (149-251)||(38933615-38933717)
chr2 (149-260)||(6721970-6722081)
chr2 (149-251)||(6217232-6217334)
chr2 (149-242)||(14470600-14470693)
chr2 (166-261)||(8534164-8534259)
chr2 (149-280)||(24115919-24116050)
chr2 (217-280)||(14470591-14470654)
chr2 (169-262)||(15011297-15011390)
chr2 (167-251)||(2893991-2894075)
chr2 (149-221)||(14892318-14892390)
chr2 (149-221)||(37961764-37961836)
chr2 (233-280)||(45213892-45213939)
chr2 (169-251)||(2828612-2828694)
chr2 (220-288)||(14892339-14892407)
chr2 (151-251)||(29925580-29925680)
chr2 (144-204)||(33018620-33018680)
chr2 (169-268)||(37762029-37762128)
chr2 (149-187)||(45213892-45213930)
chr2 (155-203)||(6721965-6722013)
chr2 (217-276)||(16514500-16514559)
chr2 (233-276)||(29508693-29508736)
chr2 (231-276)||(6217227-6217272)
chr2 (195-276)||(9173035-9173116)
[»] scaffold0016 (2 HSPs)
scaffold0016 (149-251)||(49711-49813)
scaffold0016 (217-276)||(49706-49765)
[»] chr6 (15 HSPs)
chr6 (149-251)||(24618609-24618711)
chr6 (149-280)||(17750902-17751032)
chr6 (149-227)||(12343152-12343230)
chr6 (169-283)||(551193-551307)
chr6 (149-227)||(13043509-13043587)
chr6 (182-276)||(24587464-24587558)
chr6 (564-606)||(1094531-1094573)
chr6 (169-251)||(10521877-10521959)
chr6 (149-203)||(24587469-24587523)
chr6 (169-218)||(2315332-2315381)
chr6 (194-251)||(31654333-31654390)
chr6 (217-280)||(17750978-17751041)
chr6 (149-204)||(24975760-24975815)
chr6 (230-276)||(24618604-24618650)
chr6 (145-205)||(7384492-7384552)
[»] scaffold0180 (2 HSPs)
scaffold0180 (149-221)||(19130-19202)
scaffold0180 (217-282)||(19119-19184)
[»] scaffold0161 (1 HSPs)
scaffold0161 (149-276)||(27228-27355)
[»] scaffold1033 (1 HSPs)
scaffold1033 (170-227)||(2265-2322)
[»] scaffold1029 (1 HSPs)
scaffold1029 (170-227)||(2265-2322)
[»] scaffold0536 (1 HSPs)
scaffold0536 (158-262)||(4909-5010)
[»] scaffold0047 (1 HSPs)
scaffold0047 (169-251)||(63785-63867)
[»] scaffold0481 (1 HSPs)
scaffold0481 (173-221)||(2919-2967)
[»] scaffold0009 (1 HSPs)
scaffold0009 (554-612)||(3307-3364)


Alignment Details
Target: chr5 (Bit Score: 296; Significance: 1e-166; HSPs: 38)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 285 - 612
Target Start/End: Original strand, 39777089 - 39777415
Alignment:
Q  285 tacctactattgtttgtctccttaattcttcatattcaattggctaaacgttacatgaaaaaatcaacctttattccatcagttttcattgccataaata 384  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39777089 tacctaatattgtttgtctccttaattcttcatattcaattggctaaacgttacatgaaaaaatcaacctttattccatcagttttcattgccataaata 39777188  T
Q  385 tcctttatattgctaagaaatcttgcaacggaaagatagggccattcatttactttgtgccactagcatcatatatatactctatattaaagagagaaga 484  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||||||||    
T  39777189 tcctttatattgctaagaaatcttgcaacggaaagatagggccattcatttagtttgtgccactagcatcatatatatactct-tataaaagagagaaga 39777287  T
Q  485 tggaacatatagaaaagaagctcatcatgctttctattaagctctcatcttttctatcgttcttctaccataattttgggcattgttagtgaagctccat 584  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  39777288 gggaacatatagaaaagaagctcatcatgctttctattaagctctcatcttttctatcgttcttctaccataattttgggcattgttattgaagctccat 39777387  T
Q  585 cgtgttcagacctcgagtgcacaggttc 612  Q
    ||||||||||||||||||||| ||||||    
T  39777388 cgtgttcagacctcgagtgcataggttc 39777415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 39776911 - 39777088
Alignment:
Q  1 tatttattattttcacattgtttcctactcgaacgacatttagtttcaccttgttttcataacataaaatttacagcatccacgccgccgctagtgaggc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  39776911 tatttattattttcacattgtttcctactcgaacgacatttagtttcaccttgttttcataacataaaatttacagcatccacgctgccgctagtgaggc 39777010  T
Q  101 cgttgtcgtttttctgtgatgaattaagtgtgttggatacttgatgatatagagttgggtgacattgatgacattgat 178  Q
    || |||||||||||||||||||||||| ||||||||||| | | ||| ||||||||||||||||||| ||||||||||    
T  39777011 cgctgtcgtttttctgtgatgaattaaatgtgttggatattgggtgacatagagttgggtgacattggtgacattgat 39777088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 289 - 465
Target Start/End: Complemental strand, 32744015 - 32743840
Alignment:
Q  289 tactattgtttgtctccttaattcttcatattcaattggctaaacgttacatgaaaaaatcaacctttattccatcagttttcattgccataaatatcct 388  Q
    |||||||||||| || ||||| ||||||||||||||| ||||||| ||||| |||||||  |||  ||| ||||| ||||||||||||||| |||||  |    
T  32744015 tactattgtttgcctacttaaatcttcatattcaattagctaaacattaca-gaaaaaacaaacgcttaatccattagttttcattgccattaatatttt 32743917  T
Q  389 ttatattgctaagaaatcttgcaacggaaagatagggccattcatttactttgtgccactagcatcatatatatact 465  Q
    |||| |||||||||||| ||||||||||||||||| |||||||||||  |||||||||||  | ||| |||||||||    
T  32743916 ttatgttgctaagaaatgttgcaacggaaagatagagccattcattttgtttgtgccactgacgtcacatatatact 32743840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 145 - 276
Target Start/End: Complemental strand, 291231 - 291100
Alignment:
Q  145 tgatatagagttgggtgacattgatgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaagtattggaacattgtaattggtc 244  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||| ||| |||||||||||| ||||| ||||| ||||   |||||| ||||| |    
T  291231 tgatatagagttgggtgacattggtgacattgatcaatcacaatgtcacaatgtttgtgaaagagaaagaaatacaagcattgtggcattgtgattggcc 291132  T
Q  245 aatgtcatcaatgtcaccaaactctatgtcac 276  Q
    ||||||| |||||||||| |||||||||||||    
T  291131 aatgtcaccaatgtcacccaactctatgtcac 291100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 149 - 280
Target Start/End: Complemental strand, 12913933 - 12913802
Alignment:
Q  149 atagagttgggtgacattgatgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaagtattggaacattgtaattggtcaatg 248  Q
    ||||||||||||||||||| ||| |||| ||||||||||| |||  |||||||||||||||||||| ||||||| ||||  ||||||| ||||| |||||    
T  12913933 atagagttgggtgacattggtgatattggtcaatcacaatgtcataatgcttgtgaaagagagagatacacaagaattgtgacattgtgattggccaatg 12913834  T
Q  249 tcatcaatgtcaccaaactctatgtcacacaa 280  Q
    ||| |||||||||  |||| ||||||||||||    
T  12913833 tcaccaatgtcactcaactatatgtcacacaa 12913802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 149 - 276
Target Start/End: Complemental strand, 19655288 - 19655161
Alignment:
Q  149 atagagttgggtgacattgatgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaagtattggaacattgtaattggtcaatg 248  Q
    ||||||||| ||||||||| ||||||||  |||||||||| |||| |||||||||||||||||||||||||||  ||||   |||||| ||||| |||||    
T  19655288 atagagttgagtgacattggtgacattgtccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtggcattgtgattggccaatg 19655189  T
Q  249 tcatcaatgtcaccaaactctatgtcac 276  Q
    ||| |||||||||| |||||||||||||    
T  19655188 tcaccaatgtcacccaactctatgtcac 19655161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 149 - 251
Target Start/End: Complemental strand, 16971274 - 16971172
Alignment:
Q  149 atagagttgggtgacattgatgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaagtattggaacattgtaattggtcaatg 248  Q
    ||||||||||||||||||| ||||||||| |||||||||| |||| |||||||||||||||||||||||||||| ||||   |||||| ||||| |||||    
T  16971274 atagagttgggtgacattggtgacattgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatg 16971175  T
Q  249 tca 251  Q
    |||    
T  16971174 tca 16971172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 150 - 251
Target Start/End: Complemental strand, 3899968 - 3899867
Alignment:
Q  150 tagagttgggtgacattgatgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaagtattggaacattgtaattggtcaatgt 249  Q
    |||||||||||||||||| ||||||||| |||||||||| |||| |||||||||||||||||||||||||||| ||||   |||||| ||||| ||||||    
T  3899968 tagagttgggtgacattggtgacattgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgt 3899869  T
Q  250 ca 251  Q
    ||    
T  3899868 ca 3899867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 149 - 262
Target Start/End: Complemental strand, 29699497 - 29699384
Alignment:
Q  149 atagagttgggtgacattgatgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaagtattggaacattgtaattggtcaatg 248  Q
    |||||||||||||| |||| ||||||||  |||||||||| |||| |||||||||||||||||||||||||||| ||||   |||||| ||||| |||||    
T  29699497 atagagttgggtgatattggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatg 29699398  T
Q  249 tcatcaatgtcacc 262  Q
    ||| ||||||||||    
T  29699397 tcaccaatgtcacc 29699384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 149 - 227
Target Start/End: Complemental strand, 2953320 - 2953242
Alignment:
Q  149 atagagttgggtgacattgatgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaagtattg 227  Q
    ||||||||||||||||||| ||||||||  |||||||||| |||| |||||||||||||||||||||||||||| ||||    
T  2953320 atagagttgggtgacattggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattg 2953242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 169 - 271
Target Start/End: Complemental strand, 16439248 - 16439146
Alignment:
Q  169 tgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaagtattggaacattgtaattggtcaatgtcatcaatgtcaccaaactc 268  Q
    |||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||  ||||||| ||||  |||||||| |||| | ||| |||||    
T  16439248 tgacattgatcaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtgacattgtgattgaccaatgtcaccaatattacccaactc 16439149  T
Q  269 tat 271  Q
    |||    
T  16439148 tat 16439146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 149 - 222
Target Start/End: Original strand, 2093945 - 2094018
Alignment:
Q  149 atagagttgggtgacattgatgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaag 222  Q
    |||||||||||||| |||| |||||||||||||||||||| |||  ||||||||||||||||||||||||||||    
T  2093945 atagagttgggtgatattggtgacattgatcaatcacaatgtcataatgcttgtgaaagagagagaaacacaag 2094018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 150 - 251
Target Start/End: Complemental strand, 26662529 - 26662427
Alignment:
Q  150 tagagttgggtgacattgatgacattgatcaa-tcacaatatcaccatgcttgtgaaagagagagaaacacaagtattggaacattgtaattggtcaatg 248  Q
    ||||||||||||| |||| |||||||| |||| ||||||| |||| || ||||||||| ||||||||||||||| | || |||||||| |||||||||||    
T  26662529 tagagttgggtgatattggtgacattggtcaaatcacaatgtcacaatacttgtgaaaaagagagaaacacaagcaatgtaacattgtgattggtcaatg 26662430  T
Q  249 tca 251  Q
    |||    
T  26662429 tca 26662427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 150 - 251
Target Start/End: Complemental strand, 26934124 - 26934022
Alignment:
Q  150 tagagttgggtgacattgatgacattgatcaa-tcacaatatcaccatgcttgtgaaagagagagaaacacaagtattggaacattgtaattggtcaatg 248  Q
    ||||||||||||| |||| |||||||| |||| ||||||| |||| || ||||||||| ||||||||||||||| | || |||||||| |||||||||||    
T  26934124 tagagttgggtgatattggtgacattggtcaaatcacaatgtcacaatacttgtgaaaaagagagaaacacaagcaatgtaacattgtgattggtcaatg 26934025  T
Q  249 tca 251  Q
    |||    
T  26934024 tca 26934022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 149 - 251
Target Start/End: Complemental strand, 28819047 - 28818945
Alignment:
Q  149 atagagttgggtgacattgatgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaagtattggaacattgtaattggtcaatg 248  Q
    ||||||||| |||| |||| |||||||| ||||||| ||| |||| |||||||||||||||||||||| ||||||||||  ||||||| ||||  |||||    
T  28819047 atagagttgagtgatattggtgacattggtcaatcataatgtcacaatgcttgtgaaagagagagaaatacaagtattgtgacattgtgattgaccaatg 28818948  T
Q  249 tca 251  Q
    |||    
T  28818947 tca 28818945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 145 - 275
Target Start/End: Original strand, 30117832 - 30117962
Alignment:
Q  145 tgatatagagttgggtgacattgatgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaagtattggaacattgtaattggtc 244  Q
    ||||||||||||||||||||||| ||| ||||| |||||||||| |||| ||| || ||||| ||||||||||||||| ||||   |||| | ||||  |    
T  30117832 tgatatagagttgggtgacattggtgatattgaccaatcacaatgtcacaatgtttatgaaaaagagagaaacacaagcattgtggcattatgattgacc 30117931  T
Q  245 aatgtcatcaatgtcaccaaactctatgtca 275  Q
    ||| ||| |||||||| | ||||||||||||    
T  30117932 aatatcaccaatgtcatccaactctatgtca 30117962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 169 - 280
Target Start/End: Original strand, 3180088 - 3180198
Alignment:
Q  169 tgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaagtattggaacattgtaattggtcaatgtcatcaatgtcaccaaactc 268  Q
    |||||||||||||||| ||| |||| ||| |||||||||||||||||||||||| ||||   |||||| ||||  |||||||| |||||| ||| |||||    
T  3180088 tgacattgatcaatcataatgtcacaatgtttgtgaaagagagagaaacacaagcattgtggcattgtgattgaccaatgtcaccaatgttacc-aactc 3180186  T
Q  269 tatgtcacacaa 280  Q
    ||||| ||||||    
T  3180187 tatgtgacacaa 3180198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 169 - 251
Target Start/End: Complemental strand, 16802554 - 16802472
Alignment:
Q  169 tgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaagtattggaacattgtaattggtcaatgtca 251  Q
    ||||||||| |||||| ||| |||| |||||||| |||||||||||||||||| |||||  ||||||| ||||| ||||||||    
T  16802554 tgacattgaccaatcagaatgtcacaatgcttgtaaaagagagagaaacacaaatattgttacattgtgattggccaatgtca 16802472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 151 - 198
Target Start/End: Complemental strand, 32485677 - 32485630
Alignment:
Q  151 agagttgggtgacattgatgacattgatcaatcacaatatcaccatgc 198  Q
    ||||||||||||||||| ||||||||||||||||||||||||| ||||    
T  32485677 agagttgggtgacattggtgacattgatcaatcacaatatcacaatgc 32485630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 149 - 198
Target Start/End: Original strand, 13312272 - 13312321
Alignment:
Q  149 atagagttgggtgacattgatgacattgatcaatcacaatatcaccatgc 198  Q
    |||||||| ||||||||||||||||||||||||||||||| |||| ||||    
T  13312272 atagagttaggtgacattgatgacattgatcaatcacaatgtcacaatgc 13312321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 195 - 276
Target Start/End: Complemental strand, 19598416 - 19598335
Alignment:
Q  195 atgcttgtgaaagagagagaaacacaagtattggaacattgtaattggtcaatgtcatcaatgtcaccaaactctatgtcac 276  Q
    |||||||||||||||||||||||||||| ||||    ||||| ||||  |||||||| |||||| ||| |||||||||||||    
T  19598416 atgcttgtgaaagagagagaaacacaagcattgtggtattgtgattgaccaatgtcaccaatgttacccaactctatgtcac 19598335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 143 - 203
Target Start/End: Original strand, 16439140 - 16439200
Alignment:
Q  143 gatgatatagagttgggtgacattgatgacattgatcaatcacaatatcaccatgcttgtg 203  Q
    |||||||||||||||||| | |||| |||||||| ||||||||||| |||| |||||||||    
T  16439140 gatgatatagagttgggtaatattggtgacattggtcaatcacaatgtcacaatgcttgtg 16439200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 217 - 276
Target Start/End: Original strand, 16971220 - 16971279
Alignment:
Q  217 cacaagtattggaacattgtaattggtcaatgtcatcaatgtcaccaaactctatgtcac 276  Q
    |||||| ||||  ||||||| |||||||||||||| |||||||||| |||||||||||||    
T  16971220 cacaagcattgtgacattgtgattggtcaatgtcaccaatgtcacccaactctatgtcac 16971279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 230 - 276
Target Start/End: Complemental strand, 13312313 - 13312267
Alignment:
Q  230 acattgtaattggtcaatgtcatcaatgtcaccaaactctatgtcac 276  Q
    ||||||| |||| |||||||||||||||||||| |||||||||||||    
T  13312313 acattgtgattgatcaatgtcatcaatgtcacctaactctatgtcac 13312267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 149 - 203
Target Start/End: Original strand, 19598340 - 19598394
Alignment:
Q  149 atagagttgggtgacattgatgacattgatcaatcacaatatcaccatgcttgtg 203  Q
    |||||||||||| |||||| |||||||| |||||||||||| ||| |||||||||    
T  19598340 atagagttgggtaacattggtgacattggtcaatcacaataccacaatgcttgtg 19598394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 179 - 253
Target Start/End: Original strand, 38134411 - 38134485
Alignment:
Q  179 caatcacaatatcaccatgcttgtgaaagagagagaaacacaagtattggaacattgtaattggtcaatgtcatc 253  Q
    |||||||||| |||| ||||| |||||||||| ||||||||||| ||||  ||||||| ||||| |||| |||||    
T  38134411 caatcacaatgtcacaatgctagtgaaagagaaagaaacacaagcattgtgacattgtgattggccaatatcatc 38134485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 149 - 241
Target Start/End: Complemental strand, 2356401 - 2356312
Alignment:
Q  149 atagagttgggtgacattgatgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaagtattggaacattgtaattg 241  Q
    |||||||||| |||||||| ||||||||  |||||||| | |||| |||||| |||||||||||  |||||||| |||  |||||||||||||    
T  2356401 atagagttggatgacattggtgacattggccaatcaca-tgtcacaatgcttatgaaagagaga--aacacaagcattataacattgtaattg 2356312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 503 - 590
Target Start/End: Complemental strand, 32743791 - 32743707
Alignment:
Q  503 agctcatcatgctttctattaagctctcatcttttctatcgttcttctaccataattttgggcattgttagtgaagctccatcgtgtt 590  Q
    |||| ||||||||||||||||||||||| |||| | | | ||||||  |   |||||||||| |||||| ||||||||||||||||||    
T  32743791 agctgatcatgctttctattaagctctcttcttctttcttgttctttga---taattttgggtattgtttgtgaagctccatcgtgtt 32743707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 189 - 286
Target Start/End: Original strand, 39031199 - 39031296
Alignment:
Q  189 atcaccatgcttgtgaaagagagagaaacacaagtattggaacattgtaattggtcaatgtcatcaatgtcaccaaactctatgtcacacaaatacta 286  Q
    ||||| |||||||||||||| ||||||| |||| ||||   | ||||| |||| ||| ||||| ||||||||||  |||||||||||  |||||||||    
T  39031199 atcacaatgcttgtgaaagaaagagaaatacaaatattatgatattgtgattgatcagtgtcaccaatgtcaccccactctatgtcatccaaatacta 39031296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 143 - 192
Target Start/End: Complemental strand, 39031287 - 39031238
Alignment:
Q  143 gatgatatagagttgggtgacattgatgacattgatcaatcacaatatca 192  Q
    ||||| ||||||| ||||||||||| ||||| ||||||||||||||||||    
T  39031287 gatgacatagagtggggtgacattggtgacactgatcaatcacaatatca 39031238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 143 - 227
Target Start/End: Complemental strand, 228486 - 228402
Alignment:
Q  143 gatgatatagagttgggtgacattgatgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaagtattg 227  Q
    ||||| ||| |||||||| | |||||||| |||  ||||||||||| |||  |||||||| ||||||||| |||||||| |||||    
T  228486 gatgacataaagttgggtaatattgatgagatttgtcaatcacaatgtcaaaatgcttgtaaaagagagaaaaacacaaatattg 228402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 217 - 276
Target Start/End: Original strand, 2953266 - 2953325
Alignment:
Q  217 cacaagtattggaacattgtaattggtcaatgtcatcaatgtcaccaaactctatgtcac 276  Q
    |||||| ||||  ||||||| ||||| |||||||| |||||||||| |||||||||||||    
T  2953266 cacaagcattgtgacattgtgattggccaatgtcaccaatgtcacccaactctatgtcac 2953325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 217 - 276
Target Start/End: Original strand, 3899915 - 3899974
Alignment:
Q  217 cacaagtattggaacattgtaattggtcaatgtcatcaatgtcaccaaactctatgtcac 276  Q
    |||||| ||||  ||||||| |||||||||||||| |||||||||| ||||||| |||||    
T  3899915 cacaagcattgtgacattgtgattggtcaatgtcaccaatgtcacccaactctaagtcac 3899974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 155 - 206
Target Start/End: Complemental strand, 7009452 - 7009401
Alignment:
Q  155 ttgggtgacattgatgacattgatcaatcacaatatcaccatgcttgtgaaa 206  Q
    |||| |||||||| ||| |||| |||||||||||||||| ||||||||||||    
T  7009452 ttggatgacattggtgatattggtcaatcacaatatcacaatgcttgtgaaa 7009401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 137 - 202
Target Start/End: Original strand, 291092 - 291158
Alignment:
Q  137 atacttga-tgatatagagttgggtgacattgatgacattgatcaatcacaatatcaccatgcttgt 202  Q
    |||||||| ||| ||||||||||||||||||| ||||||||  ||||||||||  ||| ||||||||    
T  291092 atacttgagtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgt 291158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 283
Target Start/End: Original strand, 12913892 - 12913945
Alignment:
Q  230 acattgtaattggtcaatgtcatcaatgtcaccaaactctatgtcacacaaata 283  Q
    ||||||| ||||  |||| ||| |||||||||| ||||||||||||||||||||    
T  12913892 acattgtgattgaccaatatcaccaatgtcacccaactctatgtcacacaaata 12913945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 155 - 203
Target Start/End: Complemental strand, 17849269 - 17849221
Alignment:
Q  155 ttgggtgacattgatgacattgatcaatcacaatatcaccatgcttgtg 203  Q
    |||||||| |||| |||||||| |||||||||||||| | |||||||||    
T  17849269 ttgggtgatattggtgacattggtcaatcacaatatcgcaatgcttgtg 17849221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 232 - 276
Target Start/End: Complemental strand, 22083045 - 22083001
Alignment:
Q  232 attgtaattggtcaatgtcatcaatgtcaccaaactctatgtcac 276  Q
    ||||| ||||||||||||||| ||||||||  |||||||||||||    
T  22083045 attgtgattggtcaatgtcattaatgtcacacaactctatgtcac 22083001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 84; Significance: 1e-39; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 149 - 276
Target Start/End: Complemental strand, 5033291 - 5033164
Alignment:
Q  149 atagagttgggtgacattgatgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaagtattggaacattgtaattggtcaatg 248  Q
    ||||||||||||||||||| ||||||||| |||||||||| |||| |||||||||||||||||||||||||||| ||||   |||||| |||||||||||    
T  5033291 atagagttgggtgacattggtgacattgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggtcaatg 5033192  T
Q  249 tcatcaatgtcaccaaactctatgtcac 276  Q
    ||| |||||||||| |||||||||||||    
T  5033191 tcaccaatgtcacccaactctatgtcac 5033164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 150 - 276
Target Start/End: Original strand, 35440978 - 35441104
Alignment:
Q  150 tagagttgggtgacattgatgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaagtattggaacattgtaattggtcaatgt 249  Q
    |||||||||||||||||| ||||||||| |||||||||| |||| |||||||||||||||||||||||||||| ||||   |||||| ||||| ||||||    
T  35440978 tagagttgggtgacattggtgacattgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgt 35441077  T
Q  250 catcaatgtcaccaaactctatgtcac 276  Q
    || |||||||||| |||||||||||||    
T  35441078 caccaatgtcacccaactctatgtcac 35441104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 149 - 276
Target Start/End: Original strand, 33841599 - 33841726
Alignment:
Q  149 atagagttgggtgacattgatgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaagtattggaacattgtaattggtcaatg 248  Q
    ||||||||||||||||||| ||||||||| |||||||| | |||| |||||||||||||||||||||||||||| ||||   |||| | |||||||||||    
T  33841599 atagagttgggtgacattggtgacattgaccaatcacattgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattctgattggtcaatg 33841698  T
Q  249 tcatcaatgtcaccaaactctatgtcac 276  Q
    ||| |||||||||| |||||||||||||    
T  33841699 tcaccaatgtcacccaactctatgtcac 33841726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 142 - 276
Target Start/End: Complemental strand, 10086894 - 10086760
Alignment:
Q  142 tgatgatatagagttgggtgacattgatgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaagtattggaacattgtaattg 241  Q
    |||||| ||||||||||||||||||| ||||||||| |||||||||| |||| ||| |||||||||||||||||||||||  |||   ||||||| ||||    
T  10086894 tgatgacatagagttgggtgacattggtgacattgaccaatcacaatgtcacaatgtttgtgaaagagagagaaacacaaacattatgacattgtgattg 10086795  T
Q  242 gtcaatgtcatcaatgtcaccaaactctatgtcac 276  Q
      ||||||||  ||||||||| || ||||||||||    
T  10086794 accaatgtcactaatgtcacccaattctatgtcac 10086760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 149 - 276
Target Start/End: Original strand, 45191135 - 45191262
Alignment:
Q  149 atagagttgggtgacattgatgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaagtattggaacattgtaattggtcaatg 248  Q
    |||||||||| ||| |||| |||||||||| |||||||||  ||| |||||| ||||||||||||||||||||  |||| |||||| | |||||||||||    
T  45191135 atagagttggatgatattggtgacattgattaatcacaatgccacaatgcttatgaaagagagagaaacacaaacattgtaacattttgattggtcaatg 45191234  T
Q  249 tcatcaatgtcaccaaactctatgtcac 276  Q
    ||| |||| ||| | |||||||||||||    
T  45191235 tcaccaatatcatccaactctatgtcac 45191262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 169 - 276
Target Start/End: Original strand, 8243416 - 8243523
Alignment:
Q  169 tgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaagtattggaacattgtaattggtcaatgtcatcaatgtcaccaaactc 268  Q
    ||||||||||||||||||||  ||| |||||||||||||||||||||||||||| ||||   |||||| ||||  ||| |||| |||||||||| |||||    
T  8243416 tgacattgatcaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattgaccaacgtcaccaatgtcacccaactc 8243515  T
Q  269 tatgtcac 276  Q
    ||||||||    
T  8243516 tatgtcac 8243523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 169 - 280
Target Start/End: Complemental strand, 34229751 - 34229640
Alignment:
Q  169 tgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaagtattggaacattgtaattggtcaatgtcatcaatgtcaccaaactc 268  Q
    |||||||| |||||||||||||||| |||||||||||||||||||||||||||| |||   ||||||| ||||    ||||||  ||||||||| |||||    
T  34229751 tgacattggtcaatcacaatatcacaatgcttgtgaaagagagagaaacacaagcattctgacattgtgattgactcatgtcactaatgtcacccaactc 34229652  T
Q  269 tatgtcacacaa 280  Q
    ||||||||||||    
T  34229651 tatgtcacacaa 34229640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 149 - 276
Target Start/End: Complemental strand, 5667227 - 5667100
Alignment:
Q  149 atagagttgggtgacattgatgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaagtattggaacattgtaattggtcaatg 248  Q
    |||||||| | |||||||| ||||||||  |||| ||||| |||  |||||||||||||||||||||| ||||| ||||  ||||||| ||||  |||||    
T  5667227 atagagtttgatgacattggtgacattggccaattacaatgtcataatgcttgtgaaagagagagaaatacaagcattgtgacattgtgattgaccaatg 5667128  T
Q  249 tcatcaatgtcaccaaactctatgtcac 276  Q
    ||| |||||||| | |||||||||||||    
T  5667127 tcaccaatgtcatccaactctatgtcac 5667100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 143 - 276
Target Start/End: Original strand, 43844473 - 43844604
Alignment:
Q  143 gatgatatagagttgggtgacattgatgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaagtattggaacattgtaattgg 242  Q
    ||||| |||||||||||||| |||||||| |||| | ||||| ||| |||  ||||||||||  |||||||||||||||| ||||  ||||||| ||||     
T  43844473 gatgacatagagttgggtgatattgatgatattggttaatcataatgtcaggatgcttgtga--gagagagaaacacaagcattgtgacattgtgattga 43844570  T
Q  243 tcaatgtcatcaatgtcaccaaactctatgtcac 276  Q
    ||||| ||| |||||||| | |||||||||||||    
T  43844571 tcaatatcaccaatgtcatccaactctatgtcac 43844604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 143 - 251
Target Start/End: Complemental strand, 39851091 - 39850983
Alignment:
Q  143 gatgatatagagttgggtgacattgatgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaagtattggaacattgtaattgg 242  Q
    ||||| ||| ||||| ||||||||| ||||||||| |||||||||||| |  |||||||||||||||||||||||||||  ||||   |||||| |||||    
T  39851091 gatgacataaagttgagtgacattggtgacattgaccaatcacaatattataatgcttgtgaaagagagagaaacacaaacattgtggcattgtgattgg 39850992  T
Q  243 tcaatgtca 251  Q
     ||||||||    
T  39850991 ccaatgtca 39850983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 149 - 276
Target Start/End: Complemental strand, 8796552 - 8796425
Alignment:
Q  149 atagagttgggtgacattgatgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaagtattggaacattgtaattggtcaatg 248  Q
    |||||| | ||||| |||| ||||||||| |||||| ||| |||| |||||||||||||| ||||||||||||| ||||  ||||||| ||||  ||||     
T  8796552 atagagctaggtgatattggtgacattgaccaatcaaaatgtcacaatgcttgtgaaagatagagaaacacaagcattgtgacattgtgattgaccaata 8796453  T
Q  249 tcatcaatgtcaccaaactctatgtcac 276  Q
    |||  ||| ||||| |||||||||||||    
T  8796452 tcacaaatatcacctaactctatgtcac 8796425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 145 - 251
Target Start/End: Complemental strand, 6296739 - 6296633
Alignment:
Q  145 tgatatagagttgggtgacattgatgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaagtattggaacattgtaattggtc 244  Q
    |||||||||||||| |||||||  |||||||  ||||| | ||| |||| || ||||||||||||||||||||||||| |||   ||||||| |||||||    
T  6296739 tgatatagagttggatgacattagtgacattagtcaattataatgtcacaatacttgtgaaagagagagaaacacaagcattatgacattgtgattggtc 6296640  T
Q  245 aatgtca 251  Q
    |||||||    
T  6296639 aatgtca 6296633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 169 - 280
Target Start/End: Complemental strand, 4958708 - 4958599
Alignment:
Q  169 tgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaagtattggaacattgtaattggtcaatgtcatcaatgtcaccaaactc 268  Q
    ||||||||| |||||||||  |||| || ||||||||||||||||||||||||  |||   ||||||| ||||| ||||||||||||| ||| |||| ||    
T  4958708 tgacattgaccaatcacaag-tcacaatacttgtgaaagagagagaaacacaaacattatgacattgtgattggccaatgtcatcaatatca-caaattc 4958611  T
Q  269 tatgtcacacaa 280  Q
    ||||||||||||    
T  4958610 tatgtcacacaa 4958599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 169 - 227
Target Start/End: Original strand, 34541831 - 34541889
Alignment:
Q  169 tgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaagtattg 227  Q
    ||||||||  |||||| |||||||| |||||||||||||||||||||||||||| ||||    
T  34541831 tgacattggccaatcataatatcacaatgcttgtgaaagagagagaaacacaagcattg 34541889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 217 - 276
Target Start/End: Original strand, 5033237 - 5033296
Alignment:
Q  217 cacaagtattggaacattgtaattggtcaatgtcatcaatgtcaccaaactctatgtcac 276  Q
    |||||| ||||  ||||||| |||||||||||||| |||||||||| |||||||||||||    
T  5033237 cacaagcattgtgacattgtgattggtcaatgtcaccaatgtcacccaactctatgtcac 5033296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 169 - 216
Target Start/End: Original strand, 35031642 - 35031689
Alignment:
Q  169 tgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaa 216  Q
    |||||||||||||||||||| || | ||||||||||||||||||||||    
T  35031642 tgacattgatcaatcacaatgtcgcaatgcttgtgaaagagagagaaa 35031689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 149 - 203
Target Start/End: Original strand, 5033169 - 5033223
Alignment:
Q  149 atagagttgggtgacattgatgacattgatcaatcacaatatcaccatgcttgtg 203  Q
    ||||||||||||||||||| ||||||||| ||||||||||  ||| |||||||||    
T  5033169 atagagttgggtgacattggtgacattgaccaatcacaatgccacaatgcttgtg 5033223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 230 - 276
Target Start/End: Original strand, 5667186 - 5667232
Alignment:
Q  230 acattgtaattggtcaatgtcatcaatgtcaccaaactctatgtcac 276  Q
    ||||||||||||| |||||||| |||||||| |||||||||||||||    
T  5667186 acattgtaattggccaatgtcaccaatgtcatcaaactctatgtcac 5667232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 149 - 203
Target Start/End: Complemental strand, 43844599 - 43844545
Alignment:
Q  149 atagagttgggtgacattgatgacattgatcaatcacaatatcaccatgcttgtg 203  Q
    |||||||||| |||||||| ||| |||||||||||||||| |||| |||||||||    
T  43844599 atagagttggatgacattggtgatattgatcaatcacaatgtcacaatgcttgtg 43844545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 149 - 202
Target Start/End: Original strand, 5667105 - 5667158
Alignment:
Q  149 atagagttgggtgacattgatgacattgatcaatcacaatatcaccatgcttgt 202  Q
    |||||||||| |||||||| |||||||| ||||||||||| |||| ||||||||    
T  5667105 atagagttggatgacattggtgacattggtcaatcacaatgtcacaatgcttgt 5667158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 230 - 275
Target Start/End: Original strand, 10086846 - 10086891
Alignment:
Q  230 acattgtaattggtcaatgtcatcaatgtcaccaaactctatgtca 275  Q
    ||||||| |||||||||||||| |||||||||| ||||||||||||    
T  10086846 acattgtgattggtcaatgtcaccaatgtcacccaactctatgtca 10086891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 209 - 276
Target Start/End: Complemental strand, 2581895 - 2581828
Alignment:
Q  209 gagagaaacacaagtattggaacattgtaattggtcaatgtcatcaatgtcaccaaactctatgtcac 276  Q
    |||||||||||||| ||||   |||||| ||||| |||||||| |||||||||| || ||||||||||    
T  2581895 gagagaaacacaagcattgtggcattgtgattggccaatgtcaacaatgtcacccaattctatgtcac 2581828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 217 - 276
Target Start/End: Complemental strand, 33841653 - 33841594
Alignment:
Q  217 cacaagtattggaacattgtaattggtcaatgtcatcaatgtcaccaaactctatgtcac 276  Q
    |||||| ||||  ||| ||| |||||||||||||| |||||||||| |||||||||||||    
T  33841653 cacaagcattgtgacaatgtgattggtcaatgtcaccaatgtcacccaactctatgtcac 33841594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 217 - 276
Target Start/End: Complemental strand, 35441031 - 35440972
Alignment:
Q  217 cacaagtattggaacattgtaattggtcaatgtcatcaatgtcaccaaactctatgtcac 276  Q
    |||||| ||||  ||||||| |||||||||||||| |||||||||| ||||||| |||||    
T  35441031 cacaagcattgtgacattgtgattggtcaatgtcaccaatgtcacccaactctaagtcac 35440972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 149 - 203
Target Start/End: Complemental strand, 8243518 - 8243464
Alignment:
Q  149 atagagttgggtgacattgatgacattgatcaatcacaatatcaccatgcttgtg 203  Q
    ||||||||||||||||||| |||| ||| |||||||||||  ||| |||||||||    
T  8243518 atagagttgggtgacattggtgacgttggtcaatcacaatgccacaatgcttgtg 8243464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 149 - 203
Target Start/End: Complemental strand, 33841721 - 33841667
Alignment:
Q  149 atagagttgggtgacattgatgacattgatcaatcacaatatcaccatgcttgtg 203  Q
    ||||||||||||||||||| ||||||||| |||||| |||  ||| |||||||||    
T  33841721 atagagttgggtgacattggtgacattgaccaatcagaatgccacaatgcttgtg 33841667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 149 - 203
Target Start/End: Complemental strand, 35441099 - 35441045
Alignment:
Q  149 atagagttgggtgacattgatgacattgatcaatcacaatatcaccatgcttgtg 203  Q
    ||||||||||||||||||| ||||||||  ||||||||||  ||| |||||||||    
T  35441099 atagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtg 35441045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 158 - 227
Target Start/End: Complemental strand, 31159972 - 31159903
Alignment:
Q  158 ggtgacattgatgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaagtattg 227  Q
    ||||| |||| |||||||   |||||| ||| |||| |||||||||||||||||||||||| || |||||    
T  31159972 ggtgatattggtgacattcgccaatcataatgtcacaatgcttgtgaaagagagagaaacaaaaatattg 31159903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 84; Significance: 1e-39; HSPs: 45)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 149 - 276
Target Start/End: Original strand, 48993925 - 48994052
Alignment:
Q  149 atagagttgggtgacattgatgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaagtattggaacattgtaattggtcaatg 248  Q
    ||||||||||||||||||| ||||||||| |||||||||| |||| |||||||||||||||||||||||||||| ||||   |||||| |||||||||||    
T  48993925 atagagttgggtgacattggtgacattgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggtcaatg 48994024  T
Q  249 tcatcaatgtcaccaaactctatgtcac 276  Q
    ||| |||||||||| |||||||||||||    
T  48994025 tcaccaatgtcacccaactctatgtcac 48994052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 143 - 276
Target Start/End: Original strand, 29179599 - 29179732
Alignment:
Q  143 gatgatatagagttgggtgacattgatgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaagtattggaacattgtaattgg 242  Q
    ||||| ||||||||||||||||||| ||||| ||| |||||||||| |||| |||||||||||||||||||||||||||| ||||   |||||| |||||    
T  29179599 gatgacatagagttgggtgacattggtgacactgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattgg 29179698  T
Q  243 tcaatgtcatcaatgtcaccaaactctatgtcac 276  Q
     |||||||| |||||||||| |||||||||||||    
T  29179699 ccaatgtcaccaatgtcacccaactctatgtcac 29179732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 169 - 280
Target Start/End: Complemental strand, 9157420 - 9157309
Alignment:
Q  169 tgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaagtattggaacattgtaattggtcaatgtcatcaatgtcaccaaactc 268  Q
    ||||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||  ||||||| |||||||||||| | |||||||||| |||||    
T  9157420 tgacattgatcaatcacaatatcacaatgcttgagaaagagagagaaacacaagcattgtgacattgtgattggtcaatgttaccaatgtcacccaactc 9157321  T
Q  269 tatgtcacacaa 280  Q
    ||||||||||||    
T  9157320 tatgtcacacaa 9157309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 149 - 276
Target Start/End: Original strand, 32540756 - 32540883
Alignment:
Q  149 atagagttgggtgacattgatgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaagtattggaacattgtaattggtcaatg 248  Q
    ||||||||||||||||||| || |||||  |||||||||| |||| |||||||||||||||||||||||||||| |||| |||||||| |||||||||||    
T  32540756 atagagttgggtgacattggtggcattggccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtaacattgtgattggtcaatg 32540855  T
Q  249 tcatcaatgtcaccaaactctatgtcac 276  Q
    ||| |||||||| | || ||||||||||    
T  32540856 tcaccaatgtcatccaattctatgtcac 32540883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 145 - 276
Target Start/End: Original strand, 17127568 - 17127699
Alignment:
Q  145 tgatatagagttgggtgacattgatgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaagtattggaacattgtaattggtc 244  Q
    |||||||||||| |||||||||  ||||||||| |||||||||| |||| |||||||||||||||||||||||||||| ||||  ||||| | |||||||    
T  17127568 tgatatagagttaggtgacattagtgacattgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtgacattttgattggtc 17127667  T
Q  245 aatgtcatcaatgtcaccaaactctatgtcac 276  Q
    |||||||  ||||||||| |||||||| ||||    
T  17127668 aatgtcactaatgtcacctaactctatatcac 17127699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 149 - 276
Target Start/End: Complemental strand, 5995499 - 5995372
Alignment:
Q  149 atagagttgggtgacattgatgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaagtattggaacattgtaattggtcaatg 248  Q
    |||||||||| |||||||| ||||||||| ||||||||||  ||| |||||||||||||||||||||||||||| ||||   |||||| ||||| |||||    
T  5995499 atagagttggatgacattggtgacattgaccaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatg 5995400  T
Q  249 tcatcaatgtcaccaaactctatgtcac 276  Q
    | | |||||||| |||||||||||||||    
T  5995399 ttaccaatgtcatcaaactctatgtcac 5995372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 149 - 253
Target Start/End: Complemental strand, 33219703 - 33219599
Alignment:
Q  149 atagagttgggtgacattgatgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaagtattggaacattgtaattggtcaatg 248  Q
    |||||||||| |||||||| |||||||||||||||||||| |||  |||||||||||||||||| ||||||||| |||| |||||||| |||| ||||||    
T  33219703 atagagttggatgacattggtgacattgatcaatcacaatgtcataatgcttgtgaaagagagaaaaacacaagcattgtaacattgtgattgatcaatg 33219604  T
Q  249 tcatc 253  Q
    |||||    
T  33219603 tcatc 33219599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 169 - 276
Target Start/End: Complemental strand, 37155156 - 37155049
Alignment:
Q  169 tgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaagtattggaacattgtaattggtcaatgtcatcaatgtcaccaaactc 268  Q
    ||||||||  |||||||||| |||| || ||||||||||||||||||||||||| ||||  ||||||| ||||| |||||||| ||||||||||||||||    
T  37155156 tgacattggccaatcacaatgtcacaatacttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcaccaatgtcaccaaactc 37155057  T
Q  269 tatgtcac 276  Q
    ||||||||    
T  37155056 tatgtcac 37155049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 189 - 286
Target Start/End: Original strand, 36290455 - 36290552
Alignment:
Q  189 atcaccatgcttgtgaaagagagagaaacacaagtattggaacattgtaattggtcaatgtcatcaatgtcaccaaactctatgtcacacaaatacta 286  Q
    ||||| ||||||||||||||||||||||||||| |||||  ||||||| ||||||||||| || |||||||||| ||||||||||||| ||| |||||    
T  36290455 atcacaatgcttgtgaaagagagagaaacacaaatattgtgacattgtgattggtcaatgccaccaatgtcacccaactctatgtcacccaagtacta 36290552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 169 - 280
Target Start/End: Complemental strand, 4609106 - 4608995
Alignment:
Q  169 tgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaagtattggaacattgtaattggtcaatgtcatcaatgtcaccaaactc 268  Q
    |||||||| ||||||||||| |||| |||||||||||||||||||||||||||  ||||  ||||||| || ||||||||||| | |||||||| |||||    
T  4609106 tgacattggtcaatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtgacattgtgatgggtcaatgtcaccgatgtcacccaactc 4609007  T
Q  269 tatgtcacacaa 280  Q
     || ||||||||    
T  4609006 catatcacacaa 4608995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 179 - 276
Target Start/End: Original strand, 1091582 - 1091679
Alignment:
Q  179 caatcacaatatcaccatgcttgtgaaagagagagaaacacaagtattggaacattgtaattggtcaatgtcatcaatgtcaccaaactctatgtcac 276  Q
    |||||||||| |||| |||||||||||||||||||||||||||  ||||  ||||||| ||||||||| |||| |||| ||||| |||||||||||||    
T  1091582 caatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtgacattgtgattggtcaaagtcaccaatatcacccaactctatgtcac 1091679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 195 - 283
Target Start/End: Original strand, 44706838 - 44706926
Alignment:
Q  195 atgcttgtgaaagagagagaaacacaagtattggaacattgtaattggtcaatgtcatcaatgtcaccaaactctatgtcacacaaata 283  Q
    |||||||||||||||||||||||||||| ||||   |||||| ||||| |||||||| |||||||||| ||||||||||||| ||||||    
T  44706838 atgcttgtgaaagagagagaaacacaagcattgcggcattgtgattggccaatgtcaccaatgtcacccaactctatgtcacccaaata 44706926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 149 - 227
Target Start/End: Complemental strand, 15220941 - 15220863
Alignment:
Q  149 atagagttgggtgacattgatgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaagtattg 227  Q
    ||||||||||||||||||| ||| ||||  |||||||||| |||| |||||||||||||||||||||||||||| ||||    
T  15220941 atagagttgggtgacattggtgatattggccaatcacaatctcacaatgcttgtgaaagagagagaaacacaagcattg 15220863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 149 - 251
Target Start/End: Complemental strand, 29371498 - 29371396
Alignment:
Q  149 atagagttgggtgacattgatgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaagtattggaacattgtaattggtcaatg 248  Q
    |||||| | |||||||||| ||| ||||| |||||||||| |||| |||||||||||||||||||||||||||  ||||  ||||||| ||||| |||||    
T  29371498 atagagctaggtgacattggtgatattgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtgacattgtgattggccaatg 29371399  T
Q  249 tca 251  Q
    |||    
T  29371398 tca 29371396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 170 - 272
Target Start/End: Complemental strand, 45728396 - 45728294
Alignment:
Q  170 gacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaagtattggaacattgtaattggtcaatgtcatcaatgtcaccaaactct 269  Q
    ||||||| ||||||||||| |||  |||||||||||||||||||||||||||| ||||  | ||||| |||||||||| ||| |||| ||||| ||||||    
T  45728396 gacattggtcaatcacaatgtcataatgcttgtgaaagagagagaaacacaagcattgtgatattgtgattggtcaatatcaccaatatcacccaactct 45728297  T
Q  270 atg 272  Q
    |||    
T  45728296 atg 45728294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 167 - 253
Target Start/End: Original strand, 46333972 - 46334058
Alignment:
Q  167 gatgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaagtattggaacattgtaattggtcaatgtcatc 253  Q
    ||||||||||  |||||||||| |||| |||||||||||||||||| ||||||||| ||||  ||||||| ||||||||||||||||    
T  46333972 gatgacattggccaatcacaatgtcacaatgcttgtgaaagagagaaaaacacaagcattgtgacattgtgattggtcaatgtcatc 46334058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 149 - 251
Target Start/End: Original strand, 49444921 - 49445021
Alignment:
Q  149 atagagttgggtgacattgatgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaagtattggaacattgtaattggtcaatg 248  Q
    ||||||||||||||||||| |||||| ||||||||||||| | || |||||||||  ||||||||||||||||| ||||   |||||| ||||| |||||    
T  49444921 atagagttgggtgacattggtgacatcgatcaatcacaatgttacaatgcttgtg--agagagagaaacacaagcattgtggcattgtgattggccaatg 49445018  T
Q  249 tca 251  Q
    |||    
T  49445019 tca 49445021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 169 - 222
Target Start/End: Original strand, 1819517 - 1819570
Alignment:
Q  169 tgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaag 222  Q
    |||||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  1819517 tgacattgatcaatcacaatgtcacaatgcttgtgaaagagagagaaacacaag 1819570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 203 - 276
Target Start/End: Complemental strand, 21630118 - 21630045
Alignment:
Q  203 gaaagagagagaaacacaagtattggaacattgtaattggtcaatgtcatcaatgtcaccaaactctatgtcac 276  Q
    |||||||||||||||||||| ||||  ||||||| |||||||||||||| |||||||||| |||| ||||||||    
T  21630118 gaaagagagagaaacacaagcattgtgacattgtgattggtcaatgtcaccaatgtcacccaactttatgtcac 21630045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 169 - 276
Target Start/End: Complemental strand, 48498525 - 48498418
Alignment:
Q  169 tgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaagtattggaacattgtaattggtcaatgtcatcaatgtcaccaaactc 268  Q
    ||||||||| |||||||||| | ||||||||||||||||||||||||||||||  ||||    ||| | ||||  ||||||||  ||||||||| |||||    
T  48498525 tgacattgaccaatcacaatgttaccatgcttgtgaaagagagagaaacacaaacattgtggtattatgattgaccaatgtcacaaatgtcacccaactc 48498426  T
Q  269 tatgtcac 276  Q
    ||||||||    
T  48498425 tatgtcac 48498418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 169 - 251
Target Start/End: Original strand, 5694918 - 5694999
Alignment:
Q  169 tgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaagtattggaacattgtaattggtcaatgtca 251  Q
    |||||||| ||||||||||||| |  ||||||||||||||||||||||||||| |||||  ||||||||||||  ||||||||    
T  5694918 tgacattggtcaatcacaatattaa-atgcttgtgaaagagagagaaacacaaatattgtgacattgtaattgaccaatgtca 5694999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 169 - 251
Target Start/End: Original strand, 8337879 - 8337961
Alignment:
Q  169 tgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaagtattggaacattgtaattggtcaatgtca 251  Q
    |||||||| ||||||||||| |||| ||| |||||||||||||||||||||||  ||||   |||||| ||||||||||||||    
T  8337879 tgacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaacacaaacattgtggcattgtgattggtcaatgtca 8337961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 208 - 288
Target Start/End: Complemental strand, 28395708 - 28395628
Alignment:
Q  208 agagagaaacacaagtattggaacattgtaattggtcaatgtcatcaatgtcaccaaactctatgtcacacaaatactacc 288  Q
    ||||||||||||||| ||||  ||||||| |||||||||||||| |||||||||  |||||||||| || ||||| |||||    
T  28395708 agagagaaacacaagcattgtgacattgtgattggtcaatgtcaccaatgtcactcaactctatgttacccaaatgctacc 28395628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 169 - 236
Target Start/End: Original strand, 741530 - 741597
Alignment:
Q  169 tgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaagtattggaacattgt 236  Q
    ||||||||  |||||||||| |||| |||||||||||||||||||||||||||| ||||  |||||||    
T  741530 tgacattgcccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtgacattgt 741597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 169 - 251
Target Start/End: Complemental strand, 34062319 - 34062237
Alignment:
Q  169 tgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaagtattggaacattgtaattggtcaatgtca 251  Q
    ||||||||| |||||||||| |||| ||| |||||||||||||||||||| ||| ||||   |||||| ||||| ||||||||    
T  34062319 tgacattgaccaatcacaatgtcacaatgtttgtgaaagagagagaaacataagcattgtggcattgtgattggccaatgtca 34062237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 169 - 247
Target Start/End: Complemental strand, 47303505 - 47303427
Alignment:
Q  169 tgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaagtattggaacattgtaattggtcaat 247  Q
    |||||||| ||||||||||| |||| ||| |||||||||||||||||||||||  |||   ||||||| ||||||||||    
T  47303505 tgacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaacacaaacattatgacattgtgattggtcaat 47303427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 169 - 251
Target Start/End: Original strand, 48604975 - 48605057
Alignment:
Q  169 tgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaagtattggaacattgtaattggtcaatgtca 251  Q
    |||||||| ||||||||||| |||| ||  ||||||||||||||||||| |||| ||||  ||||| ||||||| ||||||||    
T  48604975 tgacattggtcaatcacaatgtcacaatatttgtgaaagagagagaaacgcaagcattgtgacattataattggccaatgtca 48605057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 217 - 276
Target Start/End: Complemental strand, 48993979 - 48993920
Alignment:
Q  217 cacaagtattggaacattgtaattggtcaatgtcatcaatgtcaccaaactctatgtcac 276  Q
    |||||| ||||  ||||||| |||||||||||||| |||||||||| |||||||||||||    
T  48993979 cacaagcattgtgacattgtgattggtcaatgtcaccaatgtcacccaactctatgtcac 48993920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 149 - 203
Target Start/End: Original strand, 9157318 - 9157372
Alignment:
Q  149 atagagttgggtgacattgatgacattgatcaatcacaatatcaccatgcttgtg 203  Q
    ||||||||||||||||||| | ||||||| |||||||||| |||| |||||||||    
T  9157318 atagagttgggtgacattggtaacattgaccaatcacaatgtcacaatgcttgtg 9157372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 153 - 203
Target Start/End: Original strand, 21630054 - 21630104
Alignment:
Q  153 agttgggtgacattgatgacattgatcaatcacaatatcaccatgcttgtg 203  Q
    ||||||||||||||| ||||||||| |||||||||| |||| |||||||||    
T  21630054 agttgggtgacattggtgacattgaccaatcacaatgtcacaatgcttgtg 21630104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 149 - 203
Target Start/End: Original strand, 45728295 - 45728349
Alignment:
Q  149 atagagttgggtgacattgatgacattgatcaatcacaatatcaccatgcttgtg 203  Q
    |||||||||||||| |||| ||| ||||| ||||||||||||||| |||||||||    
T  45728295 atagagttgggtgatattggtgatattgaccaatcacaatatcacaatgcttgtg 45728349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 149 - 203
Target Start/End: Complemental strand, 48994047 - 48993993
Alignment:
Q  149 atagagttgggtgacattgatgacattgatcaatcacaatatcaccatgcttgtg 203  Q
    ||||||||||||||||||| ||||||||| ||||||||||  ||| |||||||||    
T  48994047 atagagttgggtgacattggtgacattgaccaatcacaatgccacaatgcttgtg 48993993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 169 - 276
Target Start/End: Original strand, 19711208 - 19711313
Alignment:
Q  169 tgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaagtattggaacattgtaattggtcaatgtcatcaatgtcaccaaactc 268  Q
    ||||||||| |||||||||| | || |||| ||||||||||  ||||||| ||| ||||  ||||||||||  | |||||| | |||||||||||||||     
T  19711208 tgacattgaccaatcacaatgttacaatgcatgtgaaagag--agaaacataagaattgtgacattgtaatcagccaatgttaccaatgtcaccaaactt 19711305  T
Q  269 tatgtcac 276  Q
    ||| ||||    
T  19711306 tatatcac 19711313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 169 - 221
Target Start/End: Original strand, 28928807 - 28928859
Alignment:
Q  169 tgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaa 221  Q
    ||||||||  |||||||||| ||||  ||||||||||||||||||||||||||    
T  28928807 tgacattggccaatcacaatgtcacagtgcttgtgaaagagagagaaacacaa 28928859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 217 - 280
Target Start/End: Complemental strand, 17127626 - 17127563
Alignment:
Q  217 cacaagtattggaacattgtaattggtcaatgtcatcaatgtcaccaaactctatgtcacacaa 280  Q
    |||||| ||||  ||||||| ||||||||||||||  ||||||||| |||||||| ||||||||    
T  17127626 cacaagcattgtgacattgtgattggtcaatgtcactaatgtcacctaactctatatcacacaa 17127563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 217 - 280
Target Start/End: Original strand, 29371444 - 29371507
Alignment:
Q  217 cacaagtattggaacattgtaattggtcaatgtcatcaatgtcaccaaactctatgtcacacaa 280  Q
    |||||| ||||  ||||||| |||||||||| ||| |||||||||| | |||||||||||||||    
T  29371444 cacaagcattgtgacattgtgattggtcaatatcaccaatgtcacctagctctatgtcacacaa 29371507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 217 - 276
Target Start/End: Complemental strand, 49444975 - 49444916
Alignment:
Q  217 cacaagtattggaacattgtaattggtcaatgtcatcaatgtcaccaaactctatgtcac 276  Q
    |||||| |||| |||||||| |||| || |||||| |||||||||| |||||||||||||    
T  49444975 cacaagcattgtaacattgtgattgatcgatgtcaccaatgtcacccaactctatgtcac 49444916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 145 - 203
Target Start/End: Complemental strand, 17127698 - 17127640
Alignment:
Q  145 tgatatagagttgggtgacattgatgacattgatcaatcacaatatcaccatgcttgtg 203  Q
    |||||||||||| |||||||||  ||||||||| |||||| ||| |||| |||||||||    
T  17127698 tgatatagagttaggtgacattagtgacattgaccaatcaaaatgtcacaatgcttgtg 17127640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 217 - 275
Target Start/End: Complemental strand, 29179659 - 29179601
Alignment:
Q  217 cacaagtattggaacattgtaattggtcaatgtcatcaatgtcaccaaactctatgtca 275  Q
    |||||| ||||  ||||||| |||||||| ||||| |||||||||| ||||||||||||    
T  29179659 cacaagcattgtgacattgtgattggtcagtgtcaccaatgtcacccaactctatgtca 29179601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 149 - 203
Target Start/End: Complemental strand, 29179727 - 29179673
Alignment:
Q  149 atagagttgggtgacattgatgacattgatcaatcacaatatcaccatgcttgtg 203  Q
    ||||||||||||||||||| ||||||||  ||||||||||  ||| |||||||||    
T  29179727 atagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtg 29179673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 231 - 276
Target Start/End: Original strand, 5995459 - 5995504
Alignment:
Q  231 cattgtaattggtcaatgtcatcaatgtcaccaaactctatgtcac 276  Q
    |||||| |||||||||||||| |||||||| | |||||||||||||    
T  5995459 cattgtgattggtcaatgtcaccaatgtcatccaactctatgtcac 5995504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 231 - 276
Target Start/End: Complemental strand, 46932045 - 46932000
Alignment:
Q  231 cattgtaattggtcaatgtcatcaatgtcaccaaactctatgtcac 276  Q
    |||||| ||||| |||||||| |||||||||| |||||||||||||    
T  46932045 cattgtgattggccaatgtcaccaatgtcacccaactctatgtcac 46932000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 231 - 276
Target Start/End: Original strand, 46932072 - 46932116
Alignment:
Q  231 cattgtaattggtcaatgtcatcaatgtcaccaaactctatgtcac 276  Q
    |||||| |||||||||||||| |||||||||| |||||||||||||    
T  46932072 cattgtgattggtcaatgtcaccaatgtcacc-aactctatgtcac 46932116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 232 - 288
Target Start/End: Original strand, 15220902 - 15220958
Alignment:
Q  232 attgtaattggtcaatgtcatcaatgtcaccaaactctatgtcacacaaatactacc 288  Q
    ||||| ||||| |||| ||| |||||||||| ||||||||||||| ||||| |||||    
T  15220902 attgtgattggccaatatcaccaatgtcacccaactctatgtcacccaaatgctacc 15220958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 149 - 193
Target Start/End: Complemental strand, 36290537 - 36290493
Alignment:
Q  149 atagagttgggtgacattgatgacattgatcaatcacaatatcac 193  Q
    ||||||||||||||||||| || |||||| |||||||||| ||||    
T  36290537 atagagttgggtgacattggtggcattgaccaatcacaatgtcac 36290493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 83; Significance: 5e-39; HSPs: 40)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 149 - 283
Target Start/End: Original strand, 23444277 - 23444411
Alignment:
Q  149 atagagttgggtgacattgatgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaagtattggaacattgtaattggtcaatg 248  Q
    ||||||||||||||||||| ||||||||| |||||||||| |||| |||||||||||||||||||||||||||| ||||   |||||| ||||| |||||    
T  23444277 atagagttgggtgacattggtgacattgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatg 23444376  T
Q  249 tcatcaatgtcaccaaactctatgtcacacaaata 283  Q
    ||| |||||||||| ||||||||||||| ||||||    
T  23444377 tcaccaatgtcacccaactctatgtcacccaaata 23444411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 150 - 276
Target Start/End: Complemental strand, 51265574 - 51265448
Alignment:
Q  150 tagagttgggtgacattgatgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaagtattggaacattgtaattggtcaatgt 249  Q
    |||||||||||||||||| ||||||||| |||||| ||| |||| |||||||||||||||||||||||||||| ||||   |||||| ||||| ||||||    
T  51265574 tagagttgggtgacattggtgacattgaccaatcataatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgt 51265475  T
Q  250 catcaatgtcaccaaactctatgtcac 276  Q
    || |||||||||| |||||||||||||    
T  51265474 caccaatgtcacccaactctatgtcac 51265448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 149 - 262
Target Start/End: Complemental strand, 47661972 - 47661859
Alignment:
Q  149 atagagttgggtgacattgatgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaagtattggaacattgtaattggtcaatg 248  Q
    ||||||||||||||||||| ||||||||| |||||||||| |||| |||||||||||||||||||||||||||| ||||   |||||| ||||| |||||    
T  47661972 atagagttgggtgacattggtgacattgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatg 47661873  T
Q  249 tcatcaatgtcacc 262  Q
    ||| ||||||||||    
T  47661872 tcaccaatgtcacc 47661859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 149 - 276
Target Start/End: Complemental strand, 35682296 - 35682169
Alignment:
Q  149 atagagttgggtgacattgatgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaagtattggaacattgtaattggtcaatg 248  Q
    |||||||| |||||||||| ||||||||| | |||||||| |||| |||||||||||||| |||||||||||||||||   ||||||| ||||| |||||    
T  35682296 atagagttaggtgacattggtgacattgaccgatcacaatgtcacaatgcttgtgaaagatagagaaacacaagtattatgacattgtgattggccaatg 35682197  T
Q  249 tcatcaatgtcaccaaactctatgtcac 276  Q
    ||| |||| ||||| |||||||||||||    
T  35682196 tcaccaatatcacctaactctatgtcac 35682169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 149 - 276
Target Start/End: Complemental strand, 6271832 - 6271705
Alignment:
Q  149 atagagttgggtgacattgatgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaagtattggaacattgtaattggtcaatg 248  Q
    ||||||||| |||| |||| ||||||||  |||||||||| |||| |||||||||||||||||||||||||||| ||||   |||||| ||||| |||||    
T  6271832 atagagttgagtgatattggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatg 6271733  T
Q  249 tcatcaatgtcaccaaactctatgtcac 276  Q
    ||| |||| ||||| |||||||||||||    
T  6271732 tcaccaatatcacccaactctatgtcac 6271705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 149 - 227
Target Start/End: Complemental strand, 42375140 - 42375062
Alignment:
Q  149 atagagttgggtgacattgatgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaagtattg 227  Q
    ||||||||||||||||||| |||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||    
T  42375140 atagagttgggtgacattggtgacattgatcaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattg 42375062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 153 - 286
Target Start/End: Complemental strand, 47762734 - 47762601
Alignment:
Q  153 agttgggtgacattgatgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaagtattggaacattgtaattggtcaatgtcat 252  Q
    |||||| ||| |||| |||||||| |||| || ||| |||| |||||||||||||||||||||||| ||  |||| |||||||| ||||||||||||||     
T  47762734 agttggatgatattggtgacattggtcaaccataatgtcacaatgcttgtgaaagagagagaaacataaacattgtaacattgtgattggtcaatgtcac 47762635  T
Q  253 caatgtcaccaaactctatgtcacacaaatacta 286  Q
     ||| ||||  | ||||||||||| |||||||||    
T  47762634 aaatatcactcagctctatgtcacccaaatacta 47762601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 169 - 276
Target Start/End: Original strand, 26186044 - 26186149
Alignment:
Q  169 tgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaagtattggaacattgtaattggtcaatgtcatcaatgtcaccaaactc 268  Q
    |||||||| ||||||||||| |||| |||||||||||||||  ||||||||||| ||||  | ||||| ||||| ||||||||||||||| ||| |||||    
T  26186044 tgacattggtcaatcacaatgtcacaatgcttgtgaaagag--agaaacacaagcattgtgaaattgtgattggccaatgtcatcaatgttacccaactc 26186141  T
Q  269 tatgtcac 276  Q
    ||||||||    
T  26186142 tatgtcac 26186149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 155 - 221
Target Start/End: Original strand, 25818387 - 25818453
Alignment:
Q  155 ttgggtgacattgatgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaa 221  Q
    |||||||||||||||||||||| ||||||||||| |||| ||| |||||||||||||||||||||||    
T  25818387 ttgggtgacattgatgacattggtcaatcacaatgtcacaatgattgtgaaagagagagaaacacaa 25818453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 149 - 251
Target Start/End: Complemental strand, 53954740 - 53954638
Alignment:
Q  149 atagagttgggtgacattgatgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaagtattggaacattgtaattggtcaatg 248  Q
    ||||||||||||||||||| ||||||||  |||| ||||| |||| ||||||||||||||| ||||||||| || ||||  ||||||| ||||| |||||    
T  53954740 atagagttgggtgacattggtgacattgtccaattacaatgtcacaatgcttgtgaaagagtgagaaacactagcattgtgacattgtgattggccaatg 53954641  T
Q  249 tca 251  Q
    |||    
T  53954640 tca 53954638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 189 - 276
Target Start/End: Original strand, 30861822 - 30861909
Alignment:
Q  189 atcaccatgcttgtgaaagagagagaaacacaagtattggaacattgtaattggtcaatgtcatcaatgtcaccaaactctatgtcac 276  Q
    ||||| |||||||||||||||||||||||||||| ||||   |||||| ||||| |||||||| |||| ||| | |||||||||||||    
T  30861822 atcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtcaccaatatcatccaactctatgtcac 30861909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 167 - 221
Target Start/End: Original strand, 28693949 - 28694003
Alignment:
Q  167 gatgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaa 221  Q
    ||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||    
T  28693949 gatgacattgaccaatcacaatatcacaatgtttgtgaaagagagagaaacacaa 28694003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 149 - 275
Target Start/End: Complemental strand, 44380060 - 44379934
Alignment:
Q  149 atagagttgggtgacattgatgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaagtattggaacattgtaattggtcaatg 248  Q
    ||||||||| ||||||||| ||| ||||| |||||||||| | || || ||| | ||| |||||||||| |||| ||||  ||||| ||||||| |||||    
T  44380060 atagagttgagtgacattggtgatattgaccaatcacaatgttacaatacttataaaatagagagaaacgcaagcattgtgacattataattggccaatg 44379961  T
Q  249 tcatcaatgtcaccaaactctatgtca 275  Q
    ||  |||||||||  ||||||||||||    
T  44379960 tcgccaatgtcactcaactctatgtca 44379934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 169 - 251
Target Start/End: Original strand, 55090024 - 55090106
Alignment:
Q  169 tgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaagtattggaacattgtaattggtcaatgtca 251  Q
    |||||||| ||||||||||| |||| |||||||||||||||||||| ||||||| ||||  ||||||| ||||  ||||||||    
T  55090024 tgacattggtcaatcacaatgtcacaatgcttgtgaaagagagagagacacaagcattgtgacattgtgattgaccaatgtca 55090106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 179 - 251
Target Start/End: Complemental strand, 40789279 - 40789207
Alignment:
Q  179 caatcacaatatcaccatgcttgtgaaagagagagaaacacaagtattggaacattgtaattggtcaatgtca 251  Q
    |||||||||| |||| |||||||||||||||||||||||||||  ||||  ||||||| ||||| ||||||||    
T  40789279 caatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtgacattgtgattggccaatgtca 40789207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 229 - 276
Target Start/End: Original strand, 2325068 - 2325115
Alignment:
Q  229 aacattgtaattggtcaatgtcatcaatgtcaccaaactctatgtcac 276  Q
    |||||||| ||| |||||||||||||||||||||||||||||||||||    
T  2325068 aacattgtgatttgtcaatgtcatcaatgtcaccaaactctatgtcac 2325115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 217 - 288
Target Start/End: Original strand, 47661918 - 47661989
Alignment:
Q  217 cacaagtattggaacattgtaattggtcaatgtcatcaatgtcaccaaactctatgtcacacaaatactacc 288  Q
    |||||| ||||  ||||||| |||||||||||||| |||||||||| ||||||||||||| ||||| |||||    
T  47661918 cacaagcattgtgacattgtgattggtcaatgtcaccaatgtcacccaactctatgtcacccaaatgctacc 47661989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 169 - 227
Target Start/End: Original strand, 47404613 - 47404671
Alignment:
Q  169 tgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaagtattg 227  Q
    |||||||| ||||||||||| |||| ||||||||||||||||||||||| |||| ||||    
T  47404613 tgacattggtcaatcacaatgtcacaatgcttgtgaaagagagagaaacccaagcattg 47404671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 169 - 227
Target Start/End: Original strand, 50384133 - 50384191
Alignment:
Q  169 tgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaagtattg 227  Q
    ||||||||  |||||||||| |||| |||||||||||||||||||||||||||| ||||    
T  50384133 tgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattg 50384191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 169 - 221
Target Start/End: Original strand, 31430489 - 31430541
Alignment:
Q  169 tgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaa 221  Q
    ||||||||| |||||||||| |||| |||||| ||||||||||||||||||||    
T  31430489 tgacattgaccaatcacaatgtcacaatgcttatgaaagagagagaaacacaa 31430541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 169 - 221
Target Start/End: Complemental strand, 52028659 - 52028607
Alignment:
Q  169 tgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaa 221  Q
    ||||||||  |||||||||| |||| |||||||||||||||||||||||||||    
T  52028659 tgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaa 52028607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 217 - 277
Target Start/End: Original strand, 53954686 - 53954746
Alignment:
Q  217 cacaagtattggaacattgtaattggtcaatgtcatcaatgtcaccaaactctatgtcaca 277  Q
    |||||| ||||  ||||||||||||| |||||||| |||||||||| ||||||||||||||    
T  53954686 cacaagcattgtgacattgtaattggacaatgtcaccaatgtcacccaactctatgtcaca 53954746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 217 - 288
Target Start/End: Complemental strand, 23444331 - 23444260
Alignment:
Q  217 cacaagtattggaacattgtaattggtcaatgtcatcaatgtcaccaaactctatgtcacacaaatactacc 288  Q
    |||||| ||||  ||||||| |||||||||||||| |||||||||| |||||||||| || ||||| |||||    
T  23444331 cacaagcattgtgacattgtgattggtcaatgtcaccaatgtcacccaactctatgttacccaaatgctacc 23444260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 143 - 193
Target Start/End: Complemental strand, 5048936 - 5048886
Alignment:
Q  143 gatgatatagagttgggtgacattgatgacattgatcaatcacaatatcac 193  Q
    ||||| |||||||||||||||||||||||||||| ||||||| ||| ||||    
T  5048936 gatgacatagagttgggtgacattgatgacattggtcaatcataatgtcac 5048886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 149 - 203
Target Start/End: Complemental strand, 26186144 - 26186090
Alignment:
Q  149 atagagttgggtgacattgatgacattgatcaatcacaatatcaccatgcttgtg 203  Q
    |||||||||||| |||||||||||||||  |||||||||| |||| |||||||||    
T  26186144 atagagttgggtaacattgatgacattggccaatcacaatttcacaatgcttgtg 26186090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 220 - 282
Target Start/End: Original strand, 44380009 - 44380071
Alignment:
Q  220 aagtattggaacattgtaattggtcaatgtcatcaatgtcaccaaactctatgtcacacaaat 282  Q
    |||||||| |||||||| |||||||||| ||| |||||||||  ||||||||||||| |||||    
T  44380009 aagtattgtaacattgtgattggtcaatatcaccaatgtcactcaactctatgtcacccaaat 44380071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 217 - 277
Target Start/End: Original strand, 35682242 - 35682302
Alignment:
Q  217 cacaagtattggaacattgtaattggtcaatgtcatcaatgtcaccaaactctatgtcaca 277  Q
    |||||| ||||  ||||||| || ||||||||||| |||||||||| ||||||||||||||    
T  35682242 cacaagcattgtgacattgtgatcggtcaatgtcaccaatgtcacctaactctatgtcaca 35682302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 280
Target Start/End: Complemental strand, 25618015 - 25617980
Alignment:
Q  245 aatgtcatcaatgtcaccaaactctatgtcacacaa 280  Q
    |||||||||||||||||| |||||||||||||||||    
T  25618015 aatgtcatcaatgtcacccaactctatgtcacacaa 25617980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 217 - 276
Target Start/End: Original strand, 42375086 - 42375145
Alignment:
Q  217 cacaagtattggaacattgtaattggtcaatgtcatcaatgtcaccaaactctatgtcac 276  Q
    |||||| ||||  ||||||| |||| ||||||||| |||||||||| |||||||||||||    
T  42375086 cacaagcattgtgacattgtgattgatcaatgtcaccaatgtcacccaactctatgtcac 42375145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 178 - 221
Target Start/End: Original strand, 45591447 - 45591490
Alignment:
Q  178 tcaatcacaatatcaccatgcttgtgaaagagagagaaacacaa 221  Q
    ||||||| ||| |||| |||||||||||||||||||||||||||    
T  45591447 tcaatcataatgtcacaatgcttgtgaaagagagagaaacacaa 45591490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 214 - 276
Target Start/End: Original strand, 3862619 - 3862681
Alignment:
Q  214 aaacacaagtattggaacattgtaattggtcaatgtcatcaatgtcaccaaactctatgtcac 276  Q
    ||||||||| ||||   |||||| ||||| |||||||| |||||||||| |||||||||||||    
T  3862619 aaacacaagcattgtggcattgtgattggccaatgtcaccaatgtcacccaactctatgtcac 3862681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 149 - 203
Target Start/End: Complemental strand, 3862676 - 3862622
Alignment:
Q  149 atagagttgggtgacattgatgacattgatcaatcacaatatcaccatgcttgtg 203  Q
    ||||||||||||||||||| ||||||||  ||||||||||  ||| |||||||||    
T  3862676 atagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtg 3862622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 214 - 276
Target Start/End: Original strand, 3871376 - 3871438
Alignment:
Q  214 aaacacaagtattggaacattgtaattggtcaatgtcatcaatgtcaccaaactctatgtcac 276  Q
    ||||||||| ||||   |||||| ||||| |||||||| |||||||||| |||||||||||||    
T  3871376 aaacacaagcattgtggcattgtgattggccaatgtcaccaatgtcacccaactctatgtcac 3871438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 149 - 203
Target Start/End: Complemental strand, 3871433 - 3871379
Alignment:
Q  149 atagagttgggtgacattgatgacattgatcaatcacaatatcaccatgcttgtg 203  Q
    ||||||||||||||||||| ||||||||  ||||||||||  ||| |||||||||    
T  3871433 atagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtg 3871379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 149 - 203
Target Start/End: Complemental strand, 23444399 - 23444345
Alignment:
Q  149 atagagttgggtgacattgatgacattgatcaatcacaatatcaccatgcttgtg 203  Q
    ||||||||||||||||||| ||||||||  ||||||||||  ||| |||||||||    
T  23444399 atagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtg 23444345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 230 - 276
Target Start/End: Original strand, 30709989 - 30710035
Alignment:
Q  230 acattgtaattggtcaatgtcatcaatgtcaccaaactctatgtcac 276  Q
    ||||||| ||||| |||||||| |||||||||| |||||||||||||    
T  30709989 acattgtgattggccaatgtcaccaatgtcacctaactctatgtcac 30710035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 149 - 203
Target Start/End: Original strand, 51265453 - 51265507
Alignment:
Q  149 atagagttgggtgacattgatgacattgatcaatcacaatatcaccatgcttgtg 203  Q
    ||||||||||||||||||| ||||||||  ||||||||||  ||| |||||||||    
T  51265453 atagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtg 51265507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 169 - 218
Target Start/End: Original strand, 24006098 - 24006147
Alignment:
Q  169 tgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaaca 218  Q
    ||||||||  ||||||||||  ||| ||||||||||||||||||||||||    
T  24006098 tgacattggccaatcacaatgacacaatgcttgtgaaagagagagaaaca 24006147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 251 - 288
Target Start/End: Complemental strand, 54716386 - 54716349
Alignment:
Q  251 atcaatgtcaccaaactctatgtcacacaaatactacc 288  Q
    |||||||||||| ||||||||||||| |||||||||||    
T  54716386 atcaatgtcacccaactctatgtcactcaaatactacc 54716349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 169 - 261
Target Start/End: Original strand, 31532717 - 31532809
Alignment:
Q  169 tgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaagtattggaacattgtaattggtcaatgtcatcaatgtcac 261  Q
    |||||||| ||||||||||| |||| ||   ||| ||||||||||||| ||||  ||||  || |||| |||||||||||||| | |||||||    
T  31532717 tgacattgttcaatcacaatgtcacaatatatgtaaaagagagagaaatacaaacattgtgacgttgtgattggtcaatgtcacctatgtcac 31532809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 8e-35; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 149 - 276
Target Start/End: Complemental strand, 11016999 - 11016872
Alignment:
Q  149 atagagttgggtgacattgatgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaagtattggaacattgtaattggtcaatg 248  Q
    ||||||||||||||||||| ||||||||| |||||||||| |||| ||| |||||||||||||||||||||||| ||||   |||||| ||||| |||||    
T  11016999 atagagttgggtgacattggtgacattgaccaatcacaatgtcacaatgtttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatg 11016900  T
Q  249 tcatcaatgtcaccaaactctatgtcac 276  Q
    ||| |||||||||| |||||||||||||    
T  11016899 tcaccaatgtcacccaactctatgtcac 11016872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 149 - 276
Target Start/End: Complemental strand, 38975935 - 38975808
Alignment:
Q  149 atagagttgggtgacattgatgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaagtattggaacattgtaattggtcaatg 248  Q
    |||||||| |||||||||| |||||||||||||| | |||  ||| |||||||||||||||||||||||||||| ||||   |||||| ||||  |||||    
T  38975935 atagagttaggtgacattggtgacattgatcaattataatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattgaccaatg 38975836  T
Q  249 tcatcaatgtcaccaaactctatgtcac 276  Q
    | | |||||||||| |||||||||||||    
T  38975835 ttaccaatgtcacccaactctatgtcac 38975808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 169 - 276
Target Start/End: Original strand, 41018256 - 41018363
Alignment:
Q  169 tgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaagtattggaacattgtaattggtcaatgtcatcaatgtcaccaaactc 268  Q
    ||||||||  |||||||||| || | |||||||||||||||||||||||| ||| ||||   |||||| |||||||||||||| |||||||||| |||||    
T  41018256 tgacattggccaatcacaatgtcccaatgcttgtgaaagagagagaaacataagcattgtggcattgtgattggtcaatgtcaccaatgtcacccaactc 41018355  T
Q  269 tatgtcac 276  Q
    ||||||||    
T  41018356 tatgtcac 41018363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 160 - 273
Target Start/End: Complemental strand, 15027661 - 15027548
Alignment:
Q  160 tgacattgatgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaagtattggaacattgtaattggtcaatgtcatcaatgtc 259  Q
    |||||||| ||||||||| |||||||||| |||| |||||||||||||||||||||||||||  ||||    ||||| |||||||||||||| |||||||    
T  15027661 tgacattggtgacattgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtggtattgtgattggtcaatgtcaccaatgtc 15027562  T
Q  260 accaaactctatgt 273  Q
    |   ||||||||||    
T  15027561 aaacaactctatgt 15027548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 153 - 276
Target Start/End: Complemental strand, 4290671 - 4290548
Alignment:
Q  153 agttgggtgacattgatgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaagtattggaacattgtaattggtcaatgtcat 252  Q
    ||||||||||||||| ||||||||  |||||||||| |||| || |||||||||||||||||||||| || ||||   |||||| ||||  |||| |||     
T  4290671 agttgggtgacattggtgacattggccaatcacaatgtcacaattcttgtgaaagagagagaaacacgagcattgtggcattgtgattgaccaatatcac 4290572  T
Q  253 caatgtcaccaaactctatgtcac 276  Q
    |||| ||||| |||||||||||||    
T  4290571 caatatcacccaactctatgtcac 4290548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 149 - 251
Target Start/End: Complemental strand, 42628425 - 42628323
Alignment:
Q  149 atagagttgggtgacattgatgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaagtattggaacattgtaattggtcaatg 248  Q
    ||||||||||||||||||| ||| ||||  |||||||||| || | |||||||||||||||||||||||| ||| ||||   |||||| |||||||||||    
T  42628425 atagagttgggtgacattggtgatattggccaatcacaatgtcccaatgcttgtgaaagagagagaaacataagcattgtggcattgtgattggtcaatg 42628326  T
Q  249 tca 251  Q
    |||    
T  42628325 tca 42628323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 199 - 276
Target Start/End: Original strand, 45231908 - 45231985
Alignment:
Q  199 ttgtgaaagagagagaaacacaagtattggaacattgtaattggtcaatgtcatcaatgtcaccaaactctatgtcac 276  Q
    |||||||||||||||||||| ||| |||| |||||||| ||||| |||||||| |||||||||| |||||||||||||    
T  45231908 ttgtgaaagagagagaaacaaaagcattgtaacattgtgattggccaatgtcaccaatgtcacccaactctatgtcac 45231985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 152 - 216
Target Start/End: Original strand, 48000705 - 48000769
Alignment:
Q  152 gagttgggtgacattgatgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaa 216  Q
    |||||||||||||||| ||||||||||||||||||||  ||| ||||||||||||||||||||||    
T  48000705 gagttgggtgacattggtgacattgatcaatcacaatgccacaatgcttgtgaaagagagagaaa 48000769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 149 - 221
Target Start/End: Complemental strand, 48000867 - 48000795
Alignment:
Q  149 atagagttgggtgacattgatgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaa 221  Q
    ||||||||||||||||||| ||||||||| ||||||||||  ||| |||  ||||||||||||||||||||||    
T  48000867 atagagttgggtgacattggtgacattgaccaatcacaatgccacaatgtctgtgaaagagagagaaacacaa 48000795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 169 - 276
Target Start/End: Original strand, 34854723 - 34854830
Alignment:
Q  169 tgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaagtattggaacattgtaattggtcaatgtcatcaatgtcaccaaactc 268  Q
    ||||||||  ||||||||||  ||| |||||||||||||||| ||||||||||  ||||   |||||| ||||  |||||||| |||||||||| |||||    
T  34854723 tgacattggccaatcacaatgccacaatgcttgtgaaagagatagaaacacaaacattgtggcattgtgattgaccaatgtcaccaatgtcacccaactc 34854822  T
Q  269 tatgtcac 276  Q
    ||||||||    
T  34854823 tatgtcac 34854830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 195 - 282
Target Start/End: Original strand, 30217508 - 30217594
Alignment:
Q  195 atgcttgtgaaagagagagaaacacaagtattggaacattgtaattggtcaatgtcatcaatgtcaccaaactctatgtcacacaaat 282  Q
    |||||||||||||||||||||||| ||  |||   | ||||| |||||  |||||||||||||||| |||||||||||||||||||||    
T  30217508 atgcttgtgaaagagagagaaacataaacattttgatattgtgattggcgaatgtcatcaatgtca-caaactctatgtcacacaaat 30217594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 169 - 251
Target Start/End: Complemental strand, 4649432 - 4649348
Alignment:
Q  169 tgacattgatcaatcacaatatcaccatgcttgtgaaagaga--gagaaacacaagtattggaacattgtaattggtcaatgtca 251  Q
    |||||||| ||||||||||| |||| ||||||||||||||||  |||||||||||| |||| | |||||| ||||  ||||||||    
T  4649432 tgacattggtcaatcacaatgtcacgatgcttgtgaaagagagagagaaacacaagcattgtagcattgtgattgaccaatgtca 4649348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 179 - 276
Target Start/End: Original strand, 27028831 - 27028928
Alignment:
Q  179 caatcacaatatcaccatgcttgtgaaagagagagaaacacaagtattggaacattgtaattggtcaatgtcatcaatgtcaccaaactctatgtcac 276  Q
    |||||||||| |||| |||||| ||||||||||||||||||||  ||||  ||||||| ||||  |||||||| |||  ||||| || ||||||||||    
T  27028831 caatcacaatgtcacaatgcttctgaaagagagagaaacacaaacattgtgacattgtgattgaccaatgtcaccaacatcacccaagtctatgtcac 27028928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 158 - 216
Target Start/End: Original strand, 6225542 - 6225600
Alignment:
Q  158 ggtgacattgatgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaa 216  Q
    |||||||||||||||||| |||||||||||| ||||  | ||| |||||||||||||||    
T  6225542 ggtgacattgatgacattaatcaatcacaatgtcacggtccttatgaaagagagagaaa 6225600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 181 - 251
Target Start/End: Complemental strand, 10419556 - 10419486
Alignment:
Q  181 atcacaatatcaccatgcttgtgaaagagagagaaacacaagtattggaacattgtaattggtcaatgtca 251  Q
    |||||||| |||| |  |||||||||||||||||||||||||||||| |||||| | ||||  ||||||||    
T  10419556 atcacaatgtcacaaaacttgtgaaagagagagaaacacaagtattgtaacattatgattgaccaatgtca 10419486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 230 - 276
Target Start/End: Original strand, 11016958 - 11017004
Alignment:
Q  230 acattgtaattggtcaatgtcatcaatgtcaccaaactctatgtcac 276  Q
    ||||||| |||||||||||||| |||||||||| |||||||||||||    
T  11016958 acattgtgattggtcaatgtcaccaatgtcacccaactctatgtcac 11017004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 195 - 261
Target Start/End: Original strand, 22764754 - 22764820
Alignment:
Q  195 atgcttgtgaaagagagagaaacacaagtattggaacattgtaattggtcaatgtcatcaatgtcac 261  Q
    |||||||||||||||||||||||||||  ||||  ||||||| ||||| |||| ||| |||||||||    
T  22764754 atgcttgtgaaagagagagaaacacaaacattgtgacattgtgattggccaatatcaccaatgtcac 22764820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 179 - 251
Target Start/End: Original strand, 7671949 - 7672021
Alignment:
Q  179 caatcacaatatcaccatgcttgtgaaagagagagaaacacaagtattggaacattgtaattggtcaatgtca 251  Q
    ||||||||||  ||| |||||||||||||||||||||||||||  ||||   |||||| ||||| ||||||||    
T  7671949 caatcacaatgccacaatgcttgtgaaagagagagaaacacaaacattgtggcattgtgattggccaatgtca 7672021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 149 - 188
Target Start/End: Complemental strand, 34854825 - 34854786
Alignment:
Q  149 atagagttgggtgacattgatgacattgatcaatcacaat 188  Q
    ||||||||||||||||||| |||||||| |||||||||||    
T  34854825 atagagttgggtgacattggtgacattggtcaatcacaat 34854786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 149 - 188
Target Start/End: Complemental strand, 41018358 - 41018319
Alignment:
Q  149 atagagttgggtgacattgatgacattgatcaatcacaat 188  Q
    ||||||||||||||||||| ||||||||| ||||||||||    
T  41018358 atagagttgggtgacattggtgacattgaccaatcacaat 41018319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 169 - 212
Target Start/End: Original strand, 41084208 - 41084251
Alignment:
Q  169 tgacattgatcaatcacaatatcaccatgcttgtgaaagagaga 212  Q
    |||||||||||||||| |||||||| || |||||||||||||||    
T  41084208 tgacattgatcaatcataatatcacaatccttgtgaaagagaga 41084251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 217 - 276
Target Start/End: Original strand, 42628371 - 42628430
Alignment:
Q  217 cacaagtattggaacattgtaattggtcaatgtcatcaatgtcaccaaactctatgtcac 276  Q
    |||||| ||||| ||||||| ||||| |||| ||| |||||||||| |||||||||||||    
T  42628371 cacaagcattgggacattgtgattggccaatatcaccaatgtcacccaactctatgtcac 42628430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 149 - 203
Target Start/End: Original strand, 11016877 - 11016931
Alignment:
Q  149 atagagttgggtgacattgatgacattgatcaatcacaatatcaccatgcttgtg 203  Q
    ||||||||||||||||||| ||||||||  ||||||||||  ||| |||||||||    
T  11016877 atagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtg 11016931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 169 - 251
Target Start/End: Original strand, 29053342 - 29053424
Alignment:
Q  169 tgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaagtattggaacattgtaattggtcaatgtca 251  Q
    ||||||||  ||||||||||  | | |||||||||||||||||||||||||||  ||||   |||||| ||||| ||||||||    
T  29053342 tgacattggccaatcacaatgcctcaatgcttgtgaaagagagagaaacacaaacattgtggcattgtgattggccaatgtca 29053424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 149 - 203
Target Start/End: Original strand, 38975813 - 38975867
Alignment:
Q  149 atagagttgggtgacattgatgacattgatcaatcacaatatcaccatgcttgtg 203  Q
    ||||||||||||||||||| | |||||| |||||||||||  ||| |||||||||    
T  38975813 atagagttgggtgacattggtaacattggtcaatcacaatgccacaatgcttgtg 38975867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 231 - 273
Target Start/End: Original strand, 48000827 - 48000869
Alignment:
Q  231 cattgtaattggtcaatgtcatcaatgtcaccaaactctatgt 273  Q
    |||||| |||||||||||||| |||||||||| ||||||||||    
T  48000827 cattgtgattggtcaatgtcaccaatgtcacccaactctatgt 48000869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 231 - 276
Target Start/End: Original strand, 38975895 - 38975940
Alignment:
Q  231 cattgtaattggtcaatgtcatcaatgtcaccaaactctatgtcac 276  Q
    |||| |||||| ||||||||| |||||||||| |||||||||||||    
T  38975895 cattataattgatcaatgtcaccaatgtcacctaactctatgtcac 38975940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 76; Significance: 8e-35; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 149 - 276
Target Start/End: Original strand, 30734410 - 30734537
Alignment:
Q  149 atagagttgggtgacattgatgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaagtattggaacattgtaattggtcaatg 248  Q
    |||||||| |||||||||||||||||||| | |||||||| |||| |||||||||||||| |||||||||||||||||   ||||||| ||||| |||||    
T  30734410 atagagtttggtgacattgatgacattgaccgatcacaatgtcacaatgcttgtgaaagatagagaaacacaagtattatgacattgtgattggccaatg 30734509  T
Q  249 tcatcaatgtcaccaaactctatgtcac 276  Q
    ||| |||||||||| |||||||||||||    
T  30734510 tcaccaatgtcacctaactctatgtcac 30734537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 169 - 280
Target Start/End: Complemental strand, 33689286 - 33689175
Alignment:
Q  169 tgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaagtattggaacattgtaattggtcaatgtcatcaatgtcaccaaactc 268  Q
    ||||||||  |||||||||| |||| |||||||||||||||||||||||||||| ||||  ||||||| ||||  |||| |||||||||||||| |||||    
T  33689286 tgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtgacattgtgattgaccaatatcatcaatgtcacccaactc 33689187  T
Q  269 tatgtcacacaa 280  Q
    ||||||||||||    
T  33689186 tatgtcacacaa 33689175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 155 - 276
Target Start/End: Original strand, 47492061 - 47492182
Alignment:
Q  155 ttgggtgacattgatgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaagtattggaacattgtaattggtcaatgtcatca 254  Q
    ||||||||||||| ||||||||  |||||||||| |||| |||||||||||| ||||||||||||||| ||||  ||||||| ||||| |||| | | ||    
T  47492061 ttgggtgacattggtgacattggccaatcacaatgtcacaatgcttgtgaaaaagagagaaacacaagcattgtgacattgtgattggccaatatgacca 47492160  T
Q  255 atgtcaccaaactctatgtcac 276  Q
    |||||||| |||||||||||||    
T  47492161 atgtcacccaactctatgtcac 47492182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 143 - 276
Target Start/End: Original strand, 51046075 - 51046208
Alignment:
Q  143 gatgatatagagttgggtgacattgatgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaagtattggaacattgtaattgg 242  Q
    ||||| |||||||||| ||| |||| |||||||||||||||| ||| |||| ||| |||||||||||||||||||||||| |||    |||||| |||||    
T  51046075 gatgacatagagttggatgatattggtgacattgatcaatcataatgtcacaatgtttgtgaaagagagagaaacacaagcattatggcattgtgattgg 51046174  T
Q  243 tcaatgtcatcaatgtcaccaaactctatgtcac 276  Q
     |||||||| |||||||| | |||||||||||||    
T  51046175 ccaatgtcaccaatgtcatccaactctatgtcac 51046208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 149 - 276
Target Start/End: Complemental strand, 41753094 - 41752967
Alignment:
Q  149 atagagttgggtgacattgatgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaagtattggaacattgtaattggtcaatg 248  Q
    ||||||||| ||||||||| ||||||||  ||||||||||  ||| |||||||||||||||| ||||||||||  ||||   |||||| ||||| |||||    
T  41753094 atagagttgagtgacattggtgacattggccaatcacaatgccacaatgcttgtgaaagagaaagaaacacaaacattgtggcattgtgattggccaatg 41752995  T
Q  249 tcatcaatgtcaccaaactctatgtcac 276  Q
    ||| |||||||||| |||||||||||||    
T  41752994 tcaccaatgtcacccaactctatgtcac 41752967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 169 - 283
Target Start/End: Original strand, 43139737 - 43139851
Alignment:
Q  169 tgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaagtattggaacattgtaattggtcaatgtcatcaatgtcaccaaactc 268  Q
    |||||| | ||||||||||| |||  |||||||||||||||||||||||||||| ||||   |||||| ||||| |||||||| |||||||||| |||||    
T  43139737 tgacatcggtcaatcacaatgtcagaatgcttgtgaaagagagagaaacacaagcattgtggcattgttattggccaatgtcaccaatgtcacccaactc 43139836  T
Q  269 tatgtcacacaaata 283  Q
    |||||||| ||||||    
T  43139837 tatgtcacccaaata 43139851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 149 - 275
Target Start/End: Complemental strand, 50524832 - 50524706
Alignment:
Q  149 atagagttgggtgacattgatgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaagtattggaacattgtaattggtcaatg 248  Q
    ||||||||| ||||||||| ||| |||  ||||||||||| | || |||||||||||||||||||||||||||  ||||  ||||| | |||||||||||    
T  50524832 atagagttgagtgacattggtgatattagtcaatcacaatgttacgatgcttgtgaaagagagagaaacacaaacattgtgacattatgattggtcaatg 50524733  T
Q  249 tcatcaatgtcaccaaactctatgtca 275  Q
    |||||| | ||||  ||||||||||||    
T  50524732 tcatcattatcactcaactctatgtca 50524706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 173 - 280
Target Start/End: Complemental strand, 55223338 - 55223231
Alignment:
Q  173 attgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaagtattggaacattgtaattggtcaatgtcatcaatgtcaccaaactctatg 272  Q
    |||| ||||||| ||| |||| |||||||||||||||||||||||| |||||||  || ||||| ||||  |||| ||| |||||||||| |||||||||    
T  55223338 attggtcaatcataatgtcacaatgcttgtgaaagagagagaaacataagtattctaatattgtgattgaccaatatcaccaatgtcacctaactctatg 55223239  T
Q  273 tcacacaa 280  Q
    ||||||||    
T  55223238 tcacacaa 55223231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 149 - 251
Target Start/End: Original strand, 1801454 - 1801556
Alignment:
Q  149 atagagttgggtgacattgatgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaagtattggaacattgtaattggtcaatg 248  Q
    ||||||||||||||||||| ||||||||  ||||||||||  ||| |||||||||||||||||||||||||||  ||||   |||||| ||||| |||||    
T  1801454 atagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtgaaagagagagaaacacaaacattgtggcattgtgattggccaatg 1801553  T
Q  249 tca 251  Q
    |||    
T  1801554 tca 1801556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 169 - 262
Target Start/End: Complemental strand, 50550085 - 50549992
Alignment:
Q  169 tgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaagtattggaacattgtaattggtcaatgtcatcaatgtcacc 262  Q
    |||||||||||||||| ||| |||  ||| |||||||||||||||||||||||| |||| || ||||| |||||||||||||| |||| |||||    
T  50550085 tgacattgatcaatcataatgtcataatgtttgtgaaagagagagaaacacaagcattgtaatattgtgattggtcaatgtcaccaatatcacc 50549992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 149 - 212
Target Start/End: Original strand, 45103117 - 45103180
Alignment:
Q  149 atagagttgggtgacattgatgacattgatcaatcacaatatcaccatgcttgtgaaagagaga 212  Q
    ||||||||||||||||||| ||| |||||||||||||||| |||| ||||||||||||||||||    
T  45103117 atagagttgggtgacattggtgatattgatcaatcacaatgtcacaatgcttgtgaaagagaga 45103180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 217 - 280
Target Start/End: Complemental strand, 30734464 - 30734401
Alignment:
Q  217 cacaagtattggaacattgtaattggtcaatgtcatcaatgtcaccaaactctatgtcacacaa 280  Q
    |||||| ||||  ||||||| || ||||||||||||||||||||||||||||||||||||||||    
T  30734464 cacaagcattgtgacattgtgatcggtcaatgtcatcaatgtcaccaaactctatgtcacacaa 30734401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 169 - 251
Target Start/End: Original strand, 30476502 - 30476584
Alignment:
Q  169 tgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaagtattggaacattgtaattggtcaatgtca 251  Q
    ||||||||  |||||||||| |||| |||||||||||||||||||||||||||| ||||  ||||||| ||||  ||||||||    
T  30476502 tgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtgacattgtgattgaccaatgtca 30476584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 149 - 275
Target Start/End: Original strand, 30580764 - 30580890
Alignment:
Q  149 atagagttgggtgacattgatgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaagtattggaacattgtaattggtcaatg 248  Q
    ||||| ||||||||||||| ||| ||||| |||||| ||| |||| ||  |||||||||||| ||||||||||| | ||  ||||||| ||||  |||||    
T  30580764 atagaattgggtgacattggtgatattgaccaatcataatgtcacaatatttgtgaaagagatagaaacacaagcactgtgacattgtgattgaccaatg 30580863  T
Q  249 tcatcaatgtcaccaaactctatgtca 275  Q
    |||  ||||||||| || |||||||||    
T  30580864 tcacaaatgtcacccaattctatgtca 30580890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 169 - 251
Target Start/End: Original strand, 47677283 - 47677365
Alignment:
Q  169 tgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaagtattggaacattgtaattggtcaatgtca 251  Q
    ||||||||| | |||||||| |||| |||||||||||||||||||||||||||  ||||  ||||||| |||| |||||||||    
T  47677283 tgacattgaccgatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtgacattgtgattgatcaatgtca 47677365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 173 - 241
Target Start/End: Original strand, 29031746 - 29031814
Alignment:
Q  173 attgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaagtattggaacattgtaattg 241  Q
    |||| ||||||||||| |||| |||||||||||||||||||||||||||  ||||  ||||||||||||    
T  29031746 attggtcaatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtgacattgtaattg 29031814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 155 - 227
Target Start/End: Complemental strand, 30904368 - 30904296
Alignment:
Q  155 ttgggtgacattgatgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaagtattg 227  Q
    ||||||||||| ||||||||| ||||||||||||||||| ||  || | ||||||||||||||||||| ||||    
T  30904368 ttgggtgacatcgatgacattaatcaatcacaatatcacaatatttataaaagagagagaaacacaagcattg 30904296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 167 - 273
Target Start/End: Complemental strand, 18321763 - 18321657
Alignment:
Q  167 gatgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaagtattggaacattgtaattggtcaatgtcatcaatgtcaccaaac 266  Q
    |||||||||| ||||||||||| |||| |||| ||||||| ||||| ||||||||   |||  ||||||| ||||  |||||||| |||| ||||| |||    
T  18321763 gatgacattggtcaatcacaatgtcacaatgcatgtgaaaaagagaaaaacacaaactttgtgacattgtgattgaccaatgtcaccaatatcacccaac 18321664  T
Q  267 tctatgt 273  Q
    |||||||    
T  18321663 tctatgt 18321657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 149 - 203
Target Start/End: Original strand, 33689184 - 33689238
Alignment:
Q  149 atagagttgggtgacattgatgacattgatcaatcacaatatcaccatgcttgtg 203  Q
    ||||||||||||||||||||||| |||| ||||||||||| |||| |||||||||    
T  33689184 atagagttgggtgacattgatgatattggtcaatcacaatgtcacaatgcttgtg 33689238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 199 - 251
Target Start/End: Original strand, 39385746 - 39385798
Alignment:
Q  199 ttgtgaaagagagagaaacacaagtattggaacattgtaattggtcaatgtca 251  Q
    |||||||||||||||||| |||| ||||| |||||||| ||||| ||||||||    
T  39385746 ttgtgaaagagagagaaatacaaatattgtaacattgtgattggccaatgtca 39385798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 137 - 203
Target Start/End: Original strand, 50549970 - 50550037
Alignment:
Q  137 atacttga-tgatatagagttgggtgacattgatgacattgatcaatcacaatatcaccatgcttgtg 203  Q
    |||||||| ||||||| || ||||||| |||| ||||||||| |||||||||||| || |||||||||    
T  50549970 atacttgagtgatataaagctgggtgatattggtgacattgaccaatcacaatattacaatgcttgtg 50550037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 231 - 276
Target Start/End: Complemental strand, 1801494 - 1801449
Alignment:
Q  231 cattgtaattggtcaatgtcatcaatgtcaccaaactctatgtcac 276  Q
    |||||| ||||| |||||||| |||||||||| |||||||||||||    
T  1801494 cattgtgattggccaatgtcaccaatgtcacccaactctatgtcac 1801449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 149 - 193
Target Start/End: Original strand, 18321659 - 18321703
Alignment:
Q  149 atagagttgggtgacattgatgacattgatcaatcacaatatcac 193  Q
    |||||||||||||| |||| |||||||| ||||||||||| ||||    
T  18321659 atagagttgggtgatattggtgacattggtcaatcacaatgtcac 18321703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 143 - 203
Target Start/End: Complemental strand, 30580892 - 30580832
Alignment:
Q  143 gatgatatagagttgggtgacattgatgacattgatcaatcacaatatcaccatgcttgtg 203  Q
    ||||| ||||| ||||||||||||  |||||||| ||||||||||| ||||  ||||||||    
T  30580892 gatgacatagaattgggtgacatttgtgacattggtcaatcacaatgtcacagtgcttgtg 30580832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 252 - 280
Target Start/End: Complemental strand, 47677291 - 47677263
Alignment:
Q  252 tcaatgtcaccaaactctatgtcacacaa 280  Q
    |||||||||||||||||||||||||||||    
T  47677291 tcaatgtcaccaaactctatgtcacacaa 47677263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0586 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 149 - 280
Target Start/End: Original strand, 7055 - 7185
Alignment:
Q  149 atagagttgggtgacattgatgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaagtattggaacattgtaattggtcaatg 248  Q
    ||||||||||||||||||| ||| |||   |||||||||| |||| |||||||||||||||||||||||||||| ||||  ||||||| ||||| |||||    
T  7055 atagagttgggtgacattggtgatattagccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatg 7154  T
Q  249 tcatcaatgtcaccaaactctatgtcacacaa 280  Q
    ||| |||||||||| |||||||||||||||||    
T  7155 tcaccaatgtcacc-aactctatgtcacacaa 7185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 5e-30; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 149 - 276
Target Start/End: Complemental strand, 16514554 - 16514427
Alignment:
Q  149 atagagttgggtgacattgatgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaagtattggaacattgtaattggtcaatg 248  Q
    |||||||||||||| |||| ||||||||| |||||||||| |||| |||||||||||||||||||||||||||| |||    ||| || ||||| |||||    
T  16514554 atagagttgggtgagattggtgacattgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattatggcatagtgattggccaatg 16514455  T
Q  249 tcatcaatgtcaccaaactctatgtcac 276  Q
    ||| |||||||||| |||||||||||||    
T  16514454 tcaccaatgtcacccaactctatgtcac 16514427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 149 - 276
Target Start/End: Original strand, 29508698 - 29508826
Alignment:
Q  149 atagagttgggtgacattgatgacattgatcaatcacaa-tatcaccatgcttgtgaaagagagagaaacacaagtattggaacattgtaattggtcaat 247  Q
    ||||||||||||||||||| ||||||||| ||||||||| |  ||| |||||||||||||||||||||||||||| ||||   |||||| ||||| ||||    
T  29508698 atagagttgggtgacattggtgacattgaccaatcacaaatgccacaatgcttgtgaaagagagagaaacacaagcattgcggcattgtgattggccaat 29508797  T
Q  248 gtcatcaatgtcaccaaactctatgtcac 276  Q
    |||| |||| ||||| |||||||||||||    
T  29508798 gtcaccaatatcacccaactctatgtcac 29508826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 149 - 241
Target Start/End: Original strand, 14229361 - 14229453
Alignment:
Q  149 atagagttgggtgacattgatgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaagtattggaacattgtaattg 241  Q
    |||||||| |||||||||| |||||||| ||||||||||| |||| |||||||||||||||||||||||||||| ||||  ||||||| ||||    
T  14229361 atagagttcggtgacattggtgacattggtcaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtgacattgtgattg 14229453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 149 - 251
Target Start/End: Complemental strand, 38933717 - 38933615
Alignment:
Q  149 atagagttgggtgacattgatgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaagtattggaacattgtaattggtcaatg 248  Q
    ||||||||||||||||||| |||| |||  |||||| ||| |||| |||||||||||||||||||||||||||| ||||   |||||| |||||||||||    
T  38933717 atagagttgggtgacattggtgacgttggccaatcataatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggtcaatg 38933618  T
Q  249 tca 251  Q
    |||    
T  38933617 tca 38933615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 149 - 260
Target Start/End: Complemental strand, 6722081 - 6721970
Alignment:
Q  149 atagagttgggtgacattgatgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaagtattggaacattgtaattggtcaatg 248  Q
    |||||||||| |||||||  ||| ||||  |||||||||| |||| ||| |||||||||||||||||||||||| ||||  | ||||| |||||||||||    
T  6722081 atagagttggttgacattagtgatattggccaatcacaatgtcacaatgtttgtgaaagagagagaaacacaagcattgtgatattgtgattggtcaatg 6721982  T
Q  249 tcatcaatgtca 260  Q
    ||| ||||||||    
T  6721981 tcaccaatgtca 6721970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 149 - 251
Target Start/End: Original strand, 6217232 - 6217334
Alignment:
Q  149 atagagttgggtgacattgatgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaagtattggaacattgtaattggtcaatg 248  Q
    ||||||||||||||||||| ||||||||  ||||||||||  ||| |||||||||||||||||||||||||||  ||||   |||||| ||||| |||||    
T  6217232 atagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtgaaagagagagaaacacaaacattgtggcattgtgattggccaatg 6217331  T
Q  249 tca 251  Q
    |||    
T  6217332 tca 6217334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 149 - 242
Target Start/End: Original strand, 14470600 - 14470693
Alignment:
Q  149 atagagttgggtgacattgatgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaagtattggaacattgtaattgg 242  Q
    ||||||||||||||||||| ||||||||| |||||||||| |  | |||||||||||||||||||||||||||  ||||  ||||||| |||||    
T  14470600 atagagttgggtgacattggtgacattgaccaatcacaatgttgcaatgcttgtgaaagagagagaaacacaaacattgtgacattgtgattgg 14470693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 166 - 261
Target Start/End: Complemental strand, 8534259 - 8534164
Alignment:
Q  166 tgatgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaagtattggaacattgtaattggtcaatgtcatcaatgtcac 261  Q
    |||||| |||| ||||| ||||| |||| || ||||||||| |||||||||||||| ||||   |||||||||||| |||||||||||||||||||    
T  8534259 tgatgatattggtcaattacaatgtcacaattcttgtgaaatagagagaaacacaaatatttttacattgtaattgatcaatgtcatcaatgtcac 8534164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 149 - 280
Target Start/End: Complemental strand, 24116050 - 24115919
Alignment:
Q  149 atagagttgggtgacattgatgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaagtattggaacattgtaattggtcaatg 248  Q
    ||||||||||||| ||||  ||| |||| ||||||||||| || | ||||||||||||||| | |||||||| | |||| |||||||| ||||| |||||    
T  24116050 atagagttgggtgccattagtgatattggtcaatcacaatgtcgcaatgcttgtgaaagagtgtgaaacacaggcattgtaacattgtgattggccaatg 24115951  T
Q  249 tcatcaatgtcaccaaactctatgtcacacaa 280  Q
    | | |||||| ||  |||||||| ||||||||    
T  24115950 ttaccaatgtgactcaactctatctcacacaa 24115919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 217 - 280
Target Start/End: Complemental strand, 14470654 - 14470591
Alignment:
Q  217 cacaagtattggaacattgtaattggtcaatgtcatcaatgtcaccaaactctatgtcacacaa 280  Q
    |||||| |||| |||||||| |||||||||||||| |||||||||| |||||||||||||||||    
T  14470654 cacaagcattgcaacattgtgattggtcaatgtcaccaatgtcacccaactctatgtcacacaa 14470591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 169 - 262
Target Start/End: Complemental strand, 15011390 - 15011297
Alignment:
Q  169 tgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaagtattggaacattgtaattggtcaatgtcatcaatgtcacc 262  Q
    ||||||||  |||||||||| |||| |||||||||||||||||||||||||||  ||||   |||||| ||||| |||| ||| ||||||||||    
T  15011390 tgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtggcattgtgattggccaatatcaccaatgtcacc 15011297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 167 - 251
Target Start/End: Complemental strand, 2894075 - 2893991
Alignment:
Q  167 gatgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaagtattggaacattgtaattggtcaatgtca 251  Q
    |||||||||| ||||||||| | |||| |||||||||||||||||||||| ||||| ||||  | ||||| ||||| ||||||||    
T  2894075 gatgacattggtcaatcacagtgtcacaatgcttgtgaaagagagagaaatacaagcattgtgagattgtgattggccaatgtca 2893991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 149 - 221
Target Start/End: Complemental strand, 14892390 - 14892318
Alignment:
Q  149 atagagttgggtgacattgatgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaa 221  Q
    |||||||||| |||||||| |||||||||||||||||||| | || || ||| ||||||||||||||| ||||    
T  14892390 atagagttggatgacattggtgacattgatcaatcacaatgttacaatacttatgaaagagagagaaagacaa 14892318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 149 - 221
Target Start/End: Complemental strand, 37961836 - 37961764
Alignment:
Q  149 atagagttgggtgacattgatgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaa 221  Q
    ||||||||| |||| |||  ||||||||| ||||||||||  ||| |||||||||||||||||||||||||||    
T  37961836 atagagttgagtgatatttgtgacattgaccaatcacaatgccacaatgcttgtgaaagagagagaaacacaa 37961764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 233 - 280
Target Start/End: Original strand, 45213892 - 45213939
Alignment:
Q  233 ttgtaattggtcaatgtcatcaatgtcaccaaactctatgtcacacaa 280  Q
    |||| ||||||||||||||||||||||||| |||||||||||||||||    
T  45213892 ttgtgattggtcaatgtcatcaatgtcacccaactctatgtcacacaa 45213939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 169 - 251
Target Start/End: Complemental strand, 2828694 - 2828612
Alignment:
Q  169 tgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaagtattggaacattgtaattggtcaatgtca 251  Q
    ||||||||  |||||||||| |||| |||||| ||||||||||||||||||||| |||   ||||||| ||||| ||||||||    
T  2828694 tgacattggccaatcacaatgtcacaatgcttctgaaagagagagaaacacaagcattttgacattgtgattggccaatgtca 2828612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 220 - 288
Target Start/End: Original strand, 14892339 - 14892407
Alignment:
Q  220 aagtattggaacattgtaattggtcaatgtcatcaatgtcaccaaactctatgtcacacaaatactacc 288  Q
    |||||||| |||||||| |||| ||||||||| |||||||| | ||||||||||||| ||||| |||||    
T  14892339 aagtattgtaacattgtgattgatcaatgtcaccaatgtcatccaactctatgtcacccaaatgctacc 14892407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 151 - 251
Target Start/End: Original strand, 29925580 - 29925680
Alignment:
Q  151 agagttgggtgacattgatgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaagtattggaacattgtaattggtcaatgtc 250  Q
    |||||||||||| |||| ||||||||  |  ||||||| |||  |||||||||||||||||||||||||||  ||||   |||||| ||||| |||||||    
T  29925580 agagttgggtgatattggtgacattggcccctcacaatgtcagaatgcttgtgaaagagagagaaacacaaacattgtggcattgtgattggccaatgtc 29925679  T
Q  251 a 251  Q
    |    
T  29925680 a 29925680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 144 - 204
Target Start/End: Complemental strand, 33018680 - 33018620
Alignment:
Q  144 atgatatagagttgggtgacattgatgacattgatcaatcacaatatcaccatgcttgtga 204  Q
    |||| ||||||||||||||||||| ||| |||| ||||||||||| |||| ||||||||||    
T  33018680 atgacatagagttgggtgacattggtgatattggtcaatcacaatgtcacaatgcttgtga 33018620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 169 - 268
Target Start/End: Original strand, 37762029 - 37762128
Alignment:
Q  169 tgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaagtattggaacattgtaattggtcaatgtcatcaatgtcaccaaactc 268  Q
    ||||||||| |||||||||| || | |||||||||||||||| ||||||||||| ||||  | ||||| ||||  | |||||| |||| |||| ||||||    
T  37762029 tgacattgaccaatcacaatgtcgcaatgcttgtgaaagagaaagaaacacaagcattgtgatattgtgattgacccatgtcaccaatatcactaaactc 37762128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 149 - 187
Target Start/End: Complemental strand, 45213930 - 45213892
Alignment:
Q  149 atagagttgggtgacattgatgacattgatcaatcacaa 187  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  45213930 atagagttgggtgacattgatgacattgaccaatcacaa 45213892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 155 - 203
Target Start/End: Original strand, 6721965 - 6722013
Alignment:
Q  155 ttgggtgacattgatgacattgatcaatcacaatatcaccatgcttgtg 203  Q
    |||| |||||||| ||||||||| ||||||||||||||| |||||||||    
T  6721965 ttggatgacattggtgacattgaccaatcacaatatcacaatgcttgtg 6722013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 217 - 276
Target Start/End: Original strand, 16514500 - 16514559
Alignment:
Q  217 cacaagtattggaacattgtaattggtcaatgtcatcaatgtcaccaaactctatgtcac 276  Q
    |||||| ||||  ||||||| |||||||||||||| |||| ||||| |||||||||||||    
T  16514500 cacaagcattgtgacattgtgattggtcaatgtcaccaatctcacccaactctatgtcac 16514559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 233 - 276
Target Start/End: Complemental strand, 29508736 - 29508693
Alignment:
Q  233 ttgtaattggtcaatgtcatcaatgtcaccaaactctatgtcac 276  Q
    |||| |||||||||||||| |||||||||| |||||||||||||    
T  29508736 ttgtgattggtcaatgtcaccaatgtcacccaactctatgtcac 29508693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 231 - 276
Target Start/End: Complemental strand, 6217272 - 6217227
Alignment:
Q  231 cattgtaattggtcaatgtcatcaatgtcaccaaactctatgtcac 276  Q
    |||||| ||||| |||||||| |||||||||| |||||||||||||    
T  6217272 cattgtgattggccaatgtcaccaatgtcacccaactctatgtcac 6217227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 276
Target Start/End: Original strand, 9173035 - 9173116
Alignment:
Q  195 atgcttgtgaaagagagagaaacacaagtattggaacattgtaattggtcaatgtcatcaatgtcaccaaactctatgtcac 276  Q
    |||||| | ||||| ||||||| ||||| ||||   |||||| ||||| |||| ||| |||||||||| |||||||||||||    
T  9173035 atgcttataaaagaaagagaaatacaagcattgtggcattgtgattggccaatatcaccaatgtcacccaactctatgtcac 9173116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 63; Significance: 4e-27; HSPs: 2)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 149 - 251
Target Start/End: Original strand, 49711 - 49813
Alignment:
Q  149 atagagttgggtgacattgatgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaagtattggaacattgtaattggtcaatg 248  Q
    ||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||| ||||||||||||| ||||   |||||| ||||| |||||    
T  49711 atagagttgggtgacattgatgacattgaccaatcacaatgtcacaatgcttgtgaaagaaagagaaacacaagcattgtggcattgtgattggccaatg 49810  T
Q  249 tca 251  Q
    |||    
T  49811 tca 49813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 217 - 276
Target Start/End: Complemental strand, 49765 - 49706
Alignment:
Q  217 cacaagtattggaacattgtaattggtcaatgtcatcaatgtcaccaaactctatgtcac 276  Q
    |||||| ||||  ||||||| ||||||||||||||||||||||||| |||||||||||||    
T  49765 cacaagcattgtgacattgtgattggtcaatgtcatcaatgtcacccaactctatgtcac 49706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 4e-27; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 149 - 251
Target Start/End: Original strand, 24618609 - 24618711
Alignment:
Q  149 atagagttgggtgacattgatgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaagtattggaacattgtaattggtcaatg 248  Q
    ||||||||||||||||||| |||||||||||||||||||| |||  |||||| ||||||||||||||||||||| ||||  ||||||| ||||||||| |    
T  24618609 atagagttgggtgacattggtgacattgatcaatcacaatgtcataatgcttatgaaagagagagaaacacaagcattgtgacattgtgattggtcaacg 24618708  T
Q  249 tca 251  Q
    |||    
T  24618709 tca 24618711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 149 - 280
Target Start/End: Complemental strand, 17751032 - 17750902
Alignment:
Q  149 atagagttgggtgacattgatgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaagtattggaacattgtaattggtcaatg 248  Q
    |||||||||||||| |||||||||||||  | |||||||| |||| |||||||||||||||||| ||| ||||  ||||  ||||||| ||||  |||||    
T  17751032 atagagttgggtgatattgatgacattggccgatcacaatgtcacaatgcttgtgaaagagagataaatacaaacattgtgacattgtgattgaccaatg 17750933  T
Q  249 tcatcaatgtcaccaaactctatgtcacacaa 280  Q
    ||| |||||||| | |||||||||||||||||    
T  17750932 tcaccaatgtcatc-aactctatgtcacacaa 17750902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 149 - 227
Target Start/End: Complemental strand, 12343230 - 12343152
Alignment:
Q  149 atagagttgggtgacattgatgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaagtattg 227  Q
    |||||||||||||| |||| ||||||||  |||||||||| |||| |||||||||||||||||||||||||||| ||||    
T  12343230 atagagttgggtgagattggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattg 12343152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 169 - 283
Target Start/End: Original strand, 551193 - 551307
Alignment:
Q  169 tgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaagtattggaacattgtaattggtcaatgtcatcaatgtcaccaaactc 268  Q
    |||||||| |||||||||||  ||| ||| |||||||||||||||||||||||| ||||   |||||| ||||| |||||||| |||| ||| | || ||    
T  551193 tgacattggtcaatcacaatgccacaatgtttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtcaccaatatcatccaattc 551292  T
Q  269 tatgtcacacaaata 283  Q
    |||||||| ||||||    
T  551293 tatgtcacccaaata 551307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 149 - 227
Target Start/End: Complemental strand, 13043587 - 13043509
Alignment:
Q  149 atagagttgggtgacattgatgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaagtattg 227  Q
    ||||||||| |||| |||| ||||||||   |||||||||||||| |||||||||||||||||||||||||||| ||||    
T  13043587 atagagttgagtgatattggtgacattggctaatcacaatatcacaatgcttgtgaaagagagagaaacacaagcattg 13043509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 182 - 276
Target Start/End: Complemental strand, 24587558 - 24587464
Alignment:
Q  182 tcacaatatcaccatgcttgtgaaagagagagaaacacaagtattggaacattgtaattggtcaatgtcatcaatgtcaccaaactctatgtcac 276  Q
    ||||||| |||| |||||||||||| || |||||||||||| ||||  ||||||| ||||  ||||||||  ||||||||| |||||||||||||    
T  24587558 tcacaatgtcacaatgcttgtgaaaaagcgagaaacacaagcattgtgacattgtgattgaccaatgtcactaatgtcacccaactctatgtcac 24587464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 564 - 606
Target Start/End: Complemental strand, 1094573 - 1094531
Alignment:
Q  564 gcattgttagtgaagctccatcgtgttcagacctcgagtgcac 606  Q
    |||||||| ||||||||||||||||||||| ||||||||||||    
T  1094573 gcattgtttgtgaagctccatcgtgttcaggcctcgagtgcac 1094531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 169 - 251
Target Start/End: Original strand, 10521877 - 10521959
Alignment:
Q  169 tgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaagtattggaacattgtaattggtcaatgtca 251  Q
    ||||||||  |||||||||| |||| |||||| ||||||||||||||||||||| |||   ||||||| ||||  ||||||||    
T  10521877 tgacattggccaatcacaatgtcacaatgcttatgaaagagagagaaacacaagcattatgacattgtgattgaccaatgtca 10521959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 149 - 203
Target Start/End: Original strand, 24587469 - 24587523
Alignment:
Q  149 atagagttgggtgacattgatgacattgatcaatcacaatatcaccatgcttgtg 203  Q
    ||||||||||||||||||  |||||||| ||||||||||| |||| |||||||||    
T  24587469 atagagttgggtgacattagtgacattggtcaatcacaatgtcacaatgcttgtg 24587523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 169 - 218
Target Start/End: Original strand, 2315332 - 2315381
Alignment:
Q  169 tgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaaca 218  Q
    |||||||||||||||||||| |||| ||| ||||||||||||| ||||||    
T  2315332 tgacattgatcaatcacaatgtcacaatgtttgtgaaagagagcgaaaca 2315381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 194 - 251
Target Start/End: Complemental strand, 31654390 - 31654333
Alignment:
Q  194 catgcttgtgaaagagagagaaacacaagtattggaacattgtaattggtcaatgtca 251  Q
    |||| |||||||||||||||||||||||| ||||  ||||||| ||||| ||||||||    
T  31654390 catgtttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtca 31654333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 217 - 280
Target Start/End: Original strand, 17750978 - 17751041
Alignment:
Q  217 cacaagtattggaacattgtaattggtcaatgtcatcaatgtcaccaaactctatgtcacacaa 280  Q
    |||||| ||||  ||||||| || || ||||||||||||| ||||| |||||||||||||||||    
T  17750978 cacaagcattgtgacattgtgatcggccaatgtcatcaatatcacccaactctatgtcacacaa 17751041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 149 - 204
Target Start/End: Original strand, 24975760 - 24975815
Alignment:
Q  149 atagagttgggtgacattgatgacattgatcaatcacaatatcaccatgcttgtga 204  Q
    |||||||||| |||||||| |||||||| |||||||||||  ||| ||||||||||    
T  24975760 atagagttggctgacattggtgacattggtcaatcacaatgccacaatgcttgtga 24975815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 230 - 276
Target Start/End: Complemental strand, 24618650 - 24618604
Alignment:
Q  230 acattgtaattggtcaatgtcatcaatgtcaccaaactctatgtcac 276  Q
    ||||||| |||| ||||||||| |||||||||| |||||||||||||    
T  24618650 acattgtgattgatcaatgtcaccaatgtcacccaactctatgtcac 24618604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 145 - 205
Target Start/End: Original strand, 7384492 - 7384552
Alignment:
Q  145 tgatatagagttgggtgacattgatgacattgatcaatcacaatatcaccatgcttgtgaa 205  Q
    |||||||||||||| |||||||  ||||||||| |||||||||| |||  ||| |||||||    
T  7384492 tgatatagagttggatgacattagtgacattgaccaatcacaatgtcataatgtttgtgaa 7384552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 53; Significance: 4e-21; HSPs: 2)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 149 - 221
Target Start/End: Original strand, 19130 - 19202
Alignment:
Q  149 atagagttgggtgacattgatgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaa 221  Q
    ||||||||||||||||||||||| |||||||||||||||| |||| ||||||||| |||| ||||||||||||    
T  19130 atagagttgggtgacattgatgatattgatcaatcacaatgtcacaatgcttgtggaagaaagagaaacacaa 19202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 217 - 282
Target Start/End: Complemental strand, 19184 - 19119
Alignment:
Q  217 cacaagtattggaacattgtaattggtcaatgtcatcaatgtcaccaaactctatgtcacacaaat 282  Q
    |||||| ||||  ||||||| |||| ||||| |||||||||||||| |||||||||||||||||||    
T  19184 cacaagcattgtgacattgtgattgatcaatatcatcaatgtcacccaactctatgtcacacaaat 19119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 149 - 276
Target Start/End: Original strand, 27228 - 27355
Alignment:
Q  149 atagagttgggtgacattgatgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaagtattggaacattgtaattggtcaatg 248  Q
    ||||||||||||||||||  ||| ||||  |||||||||| |||  || ||||||||||||||||||||| ||| ||||   |||||| ||||| ||||     
T  27228 atagagttgggtgacattagtgatattggccaatcacaatgtcataattcttgtgaaagagagagaaacagaagcattgtggcattgtgattggccaata 27327  T
Q  249 tcatcaatgtcaccaaactctatgtcac 276  Q
    ||| |||||||||| |||||||| ||||    
T  27328 tcaccaatgtcacccaactctatatcac 27355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1033 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: scaffold1033
Description:

Target: scaffold1033; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 170 - 227
Target Start/End: Complemental strand, 2322 - 2265
Alignment:
Q  170 gacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaagtattg 227  Q
    ||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||    
T  2322 gacattgatcaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattg 2265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1029 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: scaffold1029
Description:

Target: scaffold1029; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 170 - 227
Target Start/End: Complemental strand, 2322 - 2265
Alignment:
Q  170 gacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaagtattg 227  Q
    ||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||    
T  2322 gacattgatcaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattg 2265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 158 - 262
Target Start/End: Original strand, 4909 - 5010
Alignment:
Q  158 ggtgacattgatgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaagtattggaacattgtaattggtcaatgtcatcaatg 257  Q
    |||||||||| |||||| || |||||||||||| || |||||||||||||||||| ||||| |||   || |||||||||||||  |||| ||| ||||     
T  4909 ggtgacattggtgacatcgaccaatcacaatattacaatgcttgtgaaagagagacaaacataag---tgtaacattgtaattgaccaatatcaccaata 5005  T
Q  258 tcacc 262  Q
    |||||    
T  5006 tcacc 5010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 169 - 251
Target Start/End: Complemental strand, 63867 - 63785
Alignment:
Q  169 tgacattgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaagtattggaacattgtaattggtcaatgtca 251  Q
    ||||||||  |||||||||| |||| |||||||||||||||||||||||||||  ||||   |||||| ||||| ||||||||    
T  63867 tgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtggcattgtgattggccaatgtca 63785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0481 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0481
Description:

Target: scaffold0481; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 2919 - 2967
Alignment:
Q  173 attgatcaatcacaatatcaccatgcttgtgaaagagagagaaacacaa 221  Q
    ||||| |||||||||| |||| ||| |||||||||||||||||||||||    
T  2919 attgaccaatcacaatgtcacaatgtttgtgaaagagagagaaacacaa 2967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 554 - 612
Target Start/End: Complemental strand, 3364 - 3307
Alignment:
Q  554 ataattttgggcattgttagtgaagctccatcgtgttcagacctcgagtgcacaggttc 612  Q
    |||||||||| |||| || ||||||||||||||||||  |||||||||||||| |||||    
T  3364 ataattttggacattatttgtgaagctccatcgtgtt-tgacctcgagtgcacgggttc 3307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University