View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3237_low_90 (Length: 283)
Name: NF3237_low_90
Description: NF3237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3237_low_90 |
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Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 24 - 271
Target Start/End: Complemental strand, 36063135 - 36062888
Alignment:
| Q |
24 |
tcatttatgatccttctaagcactaccatccaataacaagaagttccattcaacacacaaaaggagactttgatctatgcatcatggtttgcatttacaa |
123 |
Q |
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| T |
36063135 |
tcatttatgatccttctaagcactaccatccaataacaagaagttccattcaacacacaaaaggagactttgatctatgcatcatggtttgcatttacaa |
36063036 |
T |
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| Q |
124 |
aaatgaaagcatgcctgcaaagatgaacctattggaagcatcccatacaagtgaagatagcaatgttagagtgataacttttatcctagtagagcttcta |
223 |
Q |
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|||| ||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |
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| T |
36063035 |
aaattaaagcatccctacaaagatgaacctattggaagcatcccatgcaagtgaagatagcaatgttagagtgatagcttttatcctagtagagtttcta |
36062936 |
T |
|
| Q |
224 |
ggaagatcaagaccacttcttgtcacgcatcaacctcatgatatccta |
271 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36062935 |
ggaagatcaagaccacttcttgtcacgcatcaacctcatgatatccta |
36062888 |
T |
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