View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3237_low_92 (Length: 280)
Name: NF3237_low_92
Description: NF3237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3237_low_92 |
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Alignment Details
Target: chr2 (Bit Score: 248; Significance: 1e-138; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 2 - 269
Target Start/End: Original strand, 9322928 - 9323194
Alignment:
| Q |
2 |
ctgctcctcgcaatctaaccaatctgtaagataaaacacctccctcctcgccagttaccacatcaccagcacaacttctggttaaaagtttcaaaagtat |
101 |
Q |
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| T |
9322928 |
ctgctactcgcaatctaaccaatctgtaagataaaacacctccctcctcgccagttaccacatcaccagcacaacttctggttaaaagtttcaaaagtat |
9323027 |
T |
|
| Q |
102 |
cacgccaaaaccttagacatctgacttgaaggaaggcattggctactttgaagcagctaactcgtgtgcgcaataacctaagacaccataagagaaaatc |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9323028 |
cacgccaaaaccttagacatctgacttgaaggaaggcattggcttctttgaagcagctaactcgtgtgcgcaataacctaagacaccataagagaaaatc |
9323127 |
T |
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| Q |
202 |
tattcaatagtagtaccagcttgagtcataaatcggtcaagacaataatcagcaaccagtgcattcat |
269 |
Q |
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| T |
9323128 |
tattcaatagtagtaccagcttgagtcataagtcggtcaagacaataatc-gcaaccagtgcattcat |
9323194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 2 - 269
Target Start/End: Complemental strand, 11424193 - 11423929
Alignment:
| Q |
2 |
ctgctcctcgcaatctaa-ccaatctgtaagataaaacacctccctcctcgccagttaccacatcaccagcacaacttctggttaaaagtttcaaaagta |
100 |
Q |
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||||| |||||||||| | |||||||||||||| || ||||||||||||| ||||||| ||||||||||||||| |||| ||||||||||| |||||||| |
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| T |
11424193 |
ctgctactcgcaatcttagccaatctgtaagatcaa-cacctccctcctcaccagttatcacatcaccagcacaccttccggttaaaagttccaaaagta |
11424095 |
T |
|
| Q |
101 |
tcacgccaaaaccttagacatctgacttgaaggaaggcattggctactttgaagcagctaactcgtgtgcgcaataacctaagacaccataagagaaaat |
200 |
Q |
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| T |
11424094 |
tcacgccgaaagcatagacatctgacttgaaagaaggcattggcttcttggaagcagctaactctggtgcgcgataacctaagacaccggcgtcaagaat |
11423995 |
T |
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| Q |
201 |
ctattcaatagtagtaccagcttgagtcataaatcggtcaagacaataatcagcaaccagtgcattcat |
269 |
Q |
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|| |||| ||||||||||||||||||||| ||||| ||||||||||||||| || |||||||||| |
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| T |
11423994 |
ctgctcaa---tagtaccagcttgagtcataagtcggtgaagacaataatcagcgacacgtgcattcat |
11423929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 36 - 164
Target Start/End: Original strand, 32304395 - 32304523
Alignment:
| Q |
36 |
aacacctccctcctcgccagttaccacatcaccagcacaacttctggttaaaagtttcaaaagtatcacgccaaaaccttagacatctgacttgaaggaa |
135 |
Q |
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||||||||||||||| | ||||| |||||||| |||||| |||| ||||||||||| ||||| ||||| || ||| | |||||||||||||||||||| |
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| T |
32304395 |
aacacctccctcctcactagttatcacatcacaagcacaccttccggttaaaagttcaaaaagcatcacaccgaaaacaaagacatctgacttgaaggaa |
32304494 |
T |
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| Q |
136 |
ggcattggctactttgaagcagctaactc |
164 |
Q |
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||||||| || ||| ||||||| |||||| |
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| T |
32304495 |
ggcattgtcttcttggaagcagttaactc |
32304523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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