View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3237_low_96 (Length: 277)
Name: NF3237_low_96
Description: NF3237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3237_low_96 |
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Alignment Details
Target: chr2 (Bit Score: 156; Significance: 6e-83; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 19 - 264
Target Start/End: Complemental strand, 25728431 - 25728186
Alignment:
| Q |
19 |
tttcccctttttctctttggtcccatattaggtcaccaaataatgccctagaaatcactaaccattnnnnnnnnnnnnnnn-gtagataacatttaaagc |
117 |
Q |
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| T |
25728431 |
tttcccctttttctctttggtcccatattaggtcaccaaataatgccctagaaatcactaaccattaaaaataaaaaaaaaagtagataatatttaaagc |
25728332 |
T |
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| Q |
118 |
ataaatcagtatttgaaaaatgaaaacttgtacnnnnnnngaaattgaaactcaaagcaacatatatatgactagaaaacgttgtttgatttcagtgaat |
217 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
25728331 |
ataaatcagtatttgaaaaatgaaaacttgtacaaaaaa-gaaattgaaactcaaagcaacatatatatgactagaaaaccttgtttgatttcagtgaat |
25728233 |
T |
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| Q |
218 |
ccatgttgagcataaaaatacattgtgccaacattcaatttttgttc |
264 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
25728232 |
ccatgttgagcataaaaatacattgtgccaacattcaatttctgttc |
25728186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 29 - 71
Target Start/End: Complemental strand, 25733224 - 25733182
Alignment:
| Q |
29 |
ttctctttggtcccatattaggtcaccaaataatgccctagaa |
71 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||| |
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| T |
25733224 |
ttctctttggtcccatattaagtcaccaaataatgccctagaa |
25733182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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