View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3237_low_97 (Length: 276)
Name: NF3237_low_97
Description: NF3237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3237_low_97 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 14 - 195
Target Start/End: Original strand, 10462424 - 10462605
Alignment:
| Q |
14 |
cacagaaagaaaatgaatcatttaatatatttgctaacagtagtaagaggaagaaaaatactatatctttgttatccttcctaggaaataattaatatta |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10462424 |
cacagaaagaaaatgaatcatttaatatatttgctaacagtagtaagaggaagaaaaatactatatctttgttatccttcctaggaaataattaatatta |
10462523 |
T |
|
| Q |
114 |
tcaatatcagacaaatggtaataggtgtagccgatcaggatttaatatcatgtgtgcctaaaaaggtcaaaattacaactcc |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10462524 |
tcaatatcagacaaatggtaataggtgtagccgatcaggatttaatatcatgtgtgcctaaaaaggtcaaaattacaactcc |
10462605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 220 - 260
Target Start/End: Original strand, 10462630 - 10462670
Alignment:
| Q |
220 |
ggccagcttgcataaatcagggagggagaatacaaaaaact |
260 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10462630 |
ggccagcttgcataaatcagggagggagaatacaaaaaact |
10462670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University