View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3237_low_98 (Length: 274)
Name: NF3237_low_98
Description: NF3237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3237_low_98 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 11216075 - 11215858
Alignment:
| Q |
1 |
ccacgacccaccgccaaaagaaaaataaaagtttgttatatagaagaaattactaaaacacccctaaatttttaatacaaattaattgcgactcaccgac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11216075 |
ccacgacccaccgccaaaagaaaaataaaagtttgttatatagaagaaattactaaaacacccctaaatttttaatacaaattaattgcgactcaccgac |
11215976 |
T |
|
| Q |
101 |
ctttttcttctcacgtgtgcgttccactccaccgaccaccgtaaacaaaagtgatggtaatttagccgggttctcgcatgtttatgtcatatatattgat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||| |
|
|
| T |
11215975 |
ctttttcttctcacgtgtgcgttccactccaccgaccaccgtaaacaaaagtgatggtgatttaaccgggttctcacatgtttatgtcatatatattgat |
11215876 |
T |
|
| Q |
201 |
acattcacacctttcttt |
218 |
Q |
| |
|
|||||||| ||||||||| |
|
|
| T |
11215875 |
acattcacgcctttcttt |
11215858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University