View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3238_high_10 (Length: 443)

Name: NF3238_high_10
Description: NF3238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3238_high_10
NF3238_high_10
[»] chr1 (3 HSPs)
chr1 (190-395)||(51194052-51194257)
chr1 (12-68)||(51194376-51194432)
chr1 (392-432)||(51193988-51194028)
[»] scaffold0204 (2 HSPs)
scaffold0204 (187-355)||(12353-12519)
scaffold0204 (20-76)||(12189-12245)
[»] chr6 (1 HSPs)
chr6 (211-380)||(13105787-13105955)
[»] chr4 (2 HSPs)
chr4 (211-395)||(46141865-46142047)
chr4 (232-270)||(34495021-34495059)
[»] chr5 (1 HSPs)
chr5 (216-310)||(22473664-22473758)
[»] chr2 (1 HSPs)
chr2 (232-271)||(13016237-13016276)
[»] scaffold0006 (1 HSPs)
scaffold0006 (232-270)||(281189-281227)
[»] chr8 (1 HSPs)
chr8 (232-289)||(44605372-44605429)


Alignment Details
Target: chr1 (Bit Score: 158; Significance: 6e-84; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 190 - 395
Target Start/End: Complemental strand, 51194257 - 51194052
Alignment:
Q  190 tcatttaattaggttaatatatcattccatcccataccctttaaattggagggg-aagcaaaatgagagtaagtgatggaatagggtggaatggatacca 288  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  51194257 tcatttaattaggttaatatatcattccatcccataccctttaaattggagggggaagcaaaatgagagtaagtgatggaatagggtggaatggatacca 51194158  T
Q  289 tcaagttccatctcatttcattannnnnnnnaaatatccaaacaatggaacataatgtcattccatcacatagcacttcattccatccaataccaccgat 388  Q
    |||||||||||| ||||||||||        |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  51194157 tcaagttccatcccatttcatta-tttttttaaatatccaaacaatggaacataatgtcattccatcacatagcactccattccatccaataccaccgat 51194059  T
Q  389 tcaaaca 395  Q
     ||||||    
T  51194058 ccaaaca 51194052  T

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Target: chr1; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 12 - 68
Target Start/End: Complemental strand, 51194432 - 51194376
Alignment:
Q  12 agagaggtaagttaaaaatataaatatgaaacaaacatcacccaaaaaaatacattt 68  Q
    ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  51194432 agagaggcaagttaaaaatataaatatgaaacaaacatcacccagaaaaatacattt 51194376  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 392 - 432
Target Start/End: Complemental strand, 51194028 - 51193988
Alignment:
Q  392 aacagtgttctttatggtttaacttcttgttgttcttcttg 432  Q
    ||||||||||||||||||||||||||  |||||||||||||    
T  51194028 aacagtgttctttatggtttaacttcacgttgttcttcttg 51193988  T

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Target: scaffold0204 (Bit Score: 101; Significance: 7e-50; HSPs: 2)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 187 - 355
Target Start/End: Original strand, 12353 - 12519
Alignment:
Q  187 ttatcatttaattaggttaatatatcattccatcccataccctttaaattggaggggaagcaaaatgagagtaagtgatggaatagggtggaatggatac 286  Q
    |||| ||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| ||    
T  12353 ttattatttaattaggttaatatatcattccatctcatacccttcaaattggaggggaagcaagatgagagtaagtgatggaatagggtggaatgga-ac 12451  T
Q  287 catcaagttccatctcatttcattannnnnnnnaaatatccaaacaatggaacataatgtcattccatc 355  Q
    |||||||||||||| |||| ||||         |||||||||||||| |||||||||||||||||||||    
T  12452 catcaagttccatcacattccatt-ctttttttaaatatccaaacaaaggaacataatgtcattccatc 12519  T

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Target: scaffold0204; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 12189 - 12245
Alignment:
Q  20 aagttaaaaatataaatatgaaacaaacatcacccaaaaaaatacatttggttggga 76  Q
    |||||||||||||||||| ||||||||||||||| | ||||||||||| ||||||||    
T  12189 aagttaaaaatataaatacgaaacaaacatcaccaagaaaaatacattcggttggga 12245  T

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Target: chr6 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 211 - 380
Target Start/End: Complemental strand, 13105955 - 13105787
Alignment:
Q  211 tcattccatcccataccctttaaattggaggggaagcaaaatgagagtaagtgatggaatagggtggaatggataccatcaagttccatctcatttcatt 310  Q
    |||||||||||||||||||  ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||    
T  13105955 tcattccatcccataccctccaaattggagtggaagcaaaatgagagtaagtgatggaatagggtgtaatggataccatcaagttccatcccattccatt 13105856  T
Q  311 annnnnnnnaaatatccaaacaatggaacataatgtcattccatcacatagcacttcattccatccaata 380  Q
              |||||||||||||||||| ||||||||||||||||||||| || | |||||||| |||||    
T  13105855 -cttttgtttaatatccaaacaatggaatataatgtcattccatcacatatcattccattccatgcaata 13105787  T

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Target: chr4 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 211 - 395
Target Start/End: Complemental strand, 46142047 - 46141865
Alignment:
Q  211 tcattccatcccataccctttaaattggaggggaagcaaaatgagagtaagtgatggaatagggtggaatggataccatcaagttccatctcatttcatt 310  Q
    |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| | || ||||    
T  46142047 tcattccatcccataccctccaaattggaggggaagcaaaatgagagtaagtgatggaatacggtggaatgaataccatcaagttccatc-ccttccatt 46141949  T
Q  311 annnnnnnnaaatatccaaacaatggaacataatgtcattccatcacatagcacttcattccatccaataccaccgattcaaaca 395  Q
              |||||||||||||||||| ||||||||||||||||||||| || | ||||| ||||||||| ||| || ||||||    
T  46141948 -cttttgtttaatatccaaacaatggaatataatgtcattccatcacataccattccattctatccaatactaccaatccaaaca 46141865  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 232 - 270
Target Start/End: Original strand, 34495021 - 34495059
Alignment:
Q  232 aaattggaggggaagcaaaatgagagtaagtgatggaat 270  Q
    ||||||||||| |||||| ||||||||||||||||||||    
T  34495021 aaattggagggtaagcaatatgagagtaagtgatggaat 34495059  T

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Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 216 - 310
Target Start/End: Original strand, 22473664 - 22473758
Alignment:
Q  216 ccatcccataccctttaaattggaggggaagcaaaatgagagtaagtgatggaatagggtggaatggataccatcaagttccatctcatttcatt 310  Q
    |||||||||||| | | ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||    
T  22473664 ccatcccataccttctgaattggaggtgaagcaaaatgagagtaagtgatggaatatggtggaatggataccatcaaattccatctcattccatt 22473758  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 232 - 271
Target Start/End: Complemental strand, 13016276 - 13016237
Alignment:
Q  232 aaattggaggggaagcaaaatgagagtaagtgatggaata 271  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  13016276 aaattggagggtaagcaaaatgagagtaagtgatggaata 13016237  T

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Target: scaffold0006 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 232 - 270
Target Start/End: Complemental strand, 281227 - 281189
Alignment:
Q  232 aaattggaggggaagcaaaatgagagtaagtgatggaat 270  Q
    ||||||||||| |||||| ||||||||||||||||||||    
T  281227 aaattggagggtaagcaagatgagagtaagtgatggaat 281189  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 232 - 289
Target Start/End: Complemental strand, 44605429 - 44605372
Alignment:
Q  232 aaattggaggggaagcaaaatgagagtaagtgatggaatagggtggaatggataccat 289  Q
    |||||||||||||| |||||||  ||||||| |||||||| | || ||||||||||||    
T  44605429 aaattggaggggaaccaaaatgtaagtaagtaatggaatatgatgaaatggataccat 44605372  T

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