View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3238_high_11 (Length: 440)

Name: NF3238_high_11
Description: NF3238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3238_high_11
NF3238_high_11
[»] chr4 (9 HSPs)
chr4 (1-384)||(9593315-9593680)
chr4 (94-427)||(9569616-9569968)
chr4 (12-279)||(9602197-9602478)
chr4 (1-396)||(9581509-9581887)
chr4 (1-396)||(9587204-9587582)
chr4 (171-352)||(9606009-9606190)
chr4 (1-109)||(9569365-9569473)
chr4 (49-162)||(37898132-37898245)
chr4 (50-117)||(54291085-54291150)
[»] chr7 (1 HSPs)
chr7 (57-171)||(42446566-42446680)
[»] chr6 (3 HSPs)
chr6 (49-160)||(32740477-32740588)
chr6 (49-171)||(29131529-29131650)
chr6 (57-169)||(29145525-29145637)
[»] scaffold0054 (2 HSPs)
scaffold0054 (62-172)||(33200-33311)
scaffold0054 (62-172)||(39551-39662)
[»] scaffold0613 (1 HSPs)
scaffold0613 (49-171)||(418-534)
[»] chr5 (2 HSPs)
chr5 (48-95)||(32643169-32643216)
chr5 (53-95)||(43323012-43323054)


Alignment Details
Target: chr4 (Bit Score: 183; Significance: 8e-99; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 1 - 384
Target Start/End: Complemental strand, 9593680 - 9593315
Alignment:
Q  1 tactcaaatgattgtggagcttgcttacaaagaagtgaattccattgatcggatagtaatgtacaaggaaaacattcttccaattggaggaataagtaat 100  Q
    |||||||| ||||||| ||||||||| |||| |||||||||| |||||||||||| |||| |||||||||||||||||||||||||||||||||||||||    
T  9593680 tactcaaacgattgtgaagcttgcttgcaaaaaagtgaattctattgatcggatattaatatacaaggaaaacattcttccaattggaggaataagtaat 9593581  T
Q  101 tagttatttttcttgttttcaccaggagcaaaatgattatggtgattgggatattaccttgtatgcaaagtgtcttgtctactggaa-tcctggagattg 199  Q
    |||||||||| ||||||||||||||||||||||||||  |||||||||| ||||||||||||||||||||||||||||| | ||||| |||  |||||||    
T  9593580 tagttattttccttgttttcaccaggagcaaaatgatcgtggtgattggaatattaccttgtatgcaaagtgtcttgtcaattggaattccctgagattg 9593481  T
Q  200 ctttaatcggtagcgggccattatccttgtatcgtcgctgatgcatatatggttttgtttttggctcatctggtgctgtttttctggtttgtggttactg 299  Q
    ||| ||||||||||||| |||||||||||||| || ||| |||| ||| ||||||||||||| |||||||                   || |||| |||    
T  9593480 cttgaatcggtagcgggtcattatccttgtattgttgctcatgcttatgtggttttgttttttgctcatc-------------------tgcggttgctg 9593400  T
Q  300 tttggcagtgggggttctggaagtttcttgggtcgatcccaccgtttttctgtcgagcctccaggcttgttttgtgcggcttcct 384  Q
    |||||||||||||||||||||||| ||||| ||| |||||||||||||| |||  ||| | ||||||||||||||||||||||||    
T  9593399 tttggcagtgggggttctggaagtgtcttgagtctatcccaccgtttttatgtgcagctttcaggcttgttttgtgcggcttcct 9593315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 94 - 427
Target Start/End: Original strand, 9569616 - 9569968
Alignment:
Q  94 aagtaattagttatttttcttgttttcaccaggagcaaaatgattatggtgattgggatattaccttgtatgcaaagtgtcttgtctactggaatcctgg 193  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  9569616 aagtaattagttatttttcttgttttcacgaggagcaaaatgattgtggtgattgggatattaccttgtatgcaaagtgtcttgtcta--ggaatcctgg 9569713  T
Q  194 agattgctttaatcggtagcgggccattatccttgtatcgtcgctgatgcatatatggttttgtttttggctcatc----------------------tg 271  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||| ||||||| |||                      ||    
T  9569714 agattgctttaatcggtagcgggccattatccttgtatcgtcgctgatgcttatgtggttctgt-tttggctaatccaggtctgtttttctggtctgctg 9569812  T
Q  272 gtgctgtttttctggtttgtggttactgtttggcagtgggggttctggaagtttcttgggtcgatcccaccgtttttctgtcgagcctccaggcttgttt 371  Q
     |||||| |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||   |||||||||||||||||    
T  9569813 ttgctgtctttctggtatgtggttactgtttggcagtgggggttctggaagtttcttcggtcgatcccaccgtttttctgggcagcctccaggcttgttt 9569912  T
Q  372 tgtgcggcttccttgcagcctagcaaactttgctgcggtcgagttttcttctgttt 427  Q
    | |||||||||||||  |||| ||||| ||| | || |||| ||||||||||||||    
T  9569913 tttgcggcttccttgtggcctggcaaagtttaccgctgtcgtgttttcttctgttt 9569968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 12 - 279
Target Start/End: Complemental strand, 9602478 - 9602197
Alignment:
Q  12 ttgtggagcttgcttacaaagaagtgaattccattgatcgg-------atagtaatgtacaaggaaaacattcttccaattggaggaataagtaattagt 104  Q
    ||||||||||| ||||||||||||||||||| ||||||||        ||| |||| ||||||||||||||||||||||| |||||||||||||||||||    
T  9602478 ttgtggagctttcttacaaagaagtgaattctattgatcgtcgatcgaatactaatatacaaggaaaacattcttccaatcggaggaataagtaattagt 9602379  T
Q  105 tatttttcttgttttcaccaggagcaaaatg-------attatggtgattgggatattaccttgtatgcaaagtgtcttgtctactggaatcctggagat 197  Q
    |||||||||||||||||||||||||||||||       |||   |||||||||||||||||||||||||||||||||||||| | ||||| || ||||||    
T  9602378 tatttttcttgttttcaccaggagcaaaatgcaaaatgattgcagtgattgggatattaccttgtatgcaaagtgtcttgtcaattggaaccccggagat 9602279  T
Q  198 tgctttaatcggtagcgggccattatccttgtatcgtcgctgatgcatatatggttttgtttttggctcatctggtgctgtt 279  Q
    | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9602278 ttcttaaatcggtagcgggccattatccttgtatcgtcgctgatgcatatatggttttgtttttggctcatctggtgctgtt 9602197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 1 - 396
Target Start/End: Complemental strand, 9581887 - 9581509
Alignment:
Q  1 tactcaaatgattgtggagcttgcttacaaagaagtgaattccattgatcggatagtaatgtacaaggaaaacattcttccaattggaggaataagtaat 100  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  9581887 tactcaaatgattgtggagcttgcttacaaagaagtgaattctattgatcggatagtaatgtacaagg-aaacattcttccaattggaggaataagtaat 9581789  T
Q  101 tagttatttttcttgttttcaccaggagcaaaatgattatggtgattgggatattaccttgtatgcaaagtgtcttgtctactggaatcctggagattgc 200  Q
    |||||||||||         |||||||| ||||||||| ||||||||||||||||||||| ||| |||||||||||||| | | |||| |  ||||| ||    
T  9581788 tagttattttt---------accaggagtaaaatgattgtggtgattgggatattaccttatatacaaagtgtcttgtcaatttgaattccagagatcgc 9581698  T
Q  201 tttaatcggtagcgggccattatccttgtatcgtcgctgatgcatatatggttttgtttttggctcatctggtgctgtttttctggtttg-tggttactg 299  Q
    || |||||||||| ||||||| ||||||||||||||||||||  | | ||||| || |||||||||||||||||||| ||||||||| || || |  |||    
T  9581697 ttgaatcggtagcaggccattgtccttgtatcgtcgctgatgattctgtggttctg-ttttggctcatctggtgctg-ttttctggtctgctgttgcctg 9581600  T
Q  300 tttggcagtgggggttctggaagtttcttgggtcgatcccaccgtttttctgtcgagcctccaggcttgttttgtgcggcttccttgcagcctagca 396  Q
    |||  |  |||    |||||||||||| |||||||||||||||||||||||||  ||| | |||||||||| |||| ||||||||||| ||||||||    
T  9581599 tttttc--tgg----tctggaagtttcctgggtcgatcccaccgtttttctgtgcagcgttcaggcttgttgtgtgtggcttccttgcggcctagca 9581509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 1 - 396
Target Start/End: Complemental strand, 9587582 - 9587204
Alignment:
Q  1 tactcaaatgattgtggagcttgcttacaaagaagtgaattccattgatcggatagtaatgtacaaggaaaacattcttccaattggaggaataagtaat 100  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  9587582 tactcaaatgattgtggagcttgcttacaaagaagtgaattctattgatcggatagtaatgtacaagg-aaacattcttccaattggaggaataagtaat 9587484  T
Q  101 tagttatttttcttgttttcaccaggagcaaaatgattatggtgattgggatattaccttgtatgcaaagtgtcttgtctactggaatcctggagattgc 200  Q
    |||||||||||         |||||||| ||||||||| ||||||||||||||||||||| ||| |||||||||||||| | | |||| |  ||||| ||    
T  9587483 tagttattttt---------accaggagtaaaatgattgtggtgattgggatattaccttatatacaaagtgtcttgtcaatttgaattccagagatcgc 9587393  T
Q  201 tttaatcggtagcgggccattatccttgtatcgtcgctgatgcatatatggttttgtttttggctcatctggtgctgtttttctggtttg-tggttactg 299  Q
    || |||||||||| ||||||| ||||||||||||||||||||  | | ||||| || |||||||||||||||||||| ||||||||| || || |  |||    
T  9587392 ttgaatcggtagcaggccattgtccttgtatcgtcgctgatgattctgtggttctg-ttttggctcatctggtgctg-ttttctggtctgctgttgcctg 9587295  T
Q  300 tttggcagtgggggttctggaagtttcttgggtcgatcccaccgtttttctgtcgagcctccaggcttgttttgtgcggcttccttgcagcctagca 396  Q
    |||  |  |||    |||||||||||| |||||||||||||||||||||||||  ||| | |||||||||| |||| ||||||||||| ||||||||    
T  9587294 tttttc--tgg----tctggaagtttcctgggtcgatcccaccgtttttctgtgcagcgttcaggcttgttgtgtgtggcttccttgcggcctagca 9587204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 171 - 352
Target Start/End: Complemental strand, 9606190 - 9606009
Alignment:
Q  171 tgtcttgtctactggaatcctggagattgctttaatcggtagcgggccattatccttgtatcgtcgctgatgcatatatggttttgtttttggctcatct 270  Q
    ||||||||| | | |||||  ||||||||||| ||||||||||| ||||||||||||||||||| |||||||| ||| |  || ||||||||||||||||    
T  9606190 tgtcttgtcaattagaatctcggagattgcttgaatcggtagcgagccattatccttgtatcgttgctgatgcttatgtccttctgtttttggctcatct 9606091  T
Q  271 ggtgctgtttttctggtttgtggttactgtttggcagtgggggttctggaagtttcttgggtcgatcccaccgtttttctgt 352  Q
    | ||||| ||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||    
T  9606090 gttgctgcttttctggtctgtggttgctgtttggcggtgggggttctggaagtttcttgggtcaatcccactgtttttctgt 9606009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 9569365 - 9569473
Alignment:
Q  1 tactcaaatgattgtggagcttgcttacaaagaagtgaattccattgatcggatagtaatgtacaaggaaaacattcttccaattggaggaataagtaat 100  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||| ||||||||||| |||||||||||||||||||||||||||    
T  9569365 tactcaaatgattgtggagcttgtttacaaagaagtgaattctattgataggatagtaatatacaaggaaaatattcttccaattggaggaataagtaat 9569464  T
Q  101 tagttattt 109  Q
    |||||||||    
T  9569465 tagttattt 9569473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 49 - 162
Target Start/End: Original strand, 37898132 - 37898245
Alignment:
Q  49 tcggatagtaatgtacaaggaaaacattcttccaattggaggaataagtaattagttatttttcttgttttcaccaggagcaaaatgattatggtgattg 148  Q
    ||||||| |||| |||| ||||||||||||| || ||||||||  ||||||||| |   | ||||||||||||||| |||  || ||||| |||| ||||    
T  37898132 tcggataataatatacatggaaaacattcttacagttggaggagcaagtaattaatggctattcttgttttcaccaagaggtaattgattgtggttattg 37898231  T
Q  149 ggatattaccttgt 162  Q
    ||||||| ||||||    
T  37898232 ggatattgccttgt 37898245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 117
Target Start/End: Original strand, 54291085 - 54291150
Alignment:
Q  50 cggatagtaatgtacaaggaaaacattcttccaattggaggaataagtaattagttatttttcttgtt 117  Q
    |||||| |||| |||||||||||||||||||| |||||| ||||  ||||||| || |||||||||||    
T  54291085 cggataataatatacaaggaaaacattcttcccattggaagaat--gtaattaattgtttttcttgtt 54291150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 57 - 171
Target Start/End: Original strand, 42446566 - 42446680
Alignment:
Q  57 taatgtacaaggaaaacattcttccaattggaggaataagtaattagttatttttcttgttttcaccaggagcaaaatgattatggtgattgggatatta 156  Q
    |||| |||||||||||||||||||||||||||||||||| |||||| || |||||||||||||||||| |||  | |||||| ||||  ||| |||||||    
T  42446566 taatatacaaggaaaacattcttccaattggaggaataattaattaattgtttttcttgttttcaccaagaggtatatgattgtggttcttgagatatta 42446665  T
Q  157 ccttgtatgcaaagt 171  Q
    |||||||| ||||||    
T  42446666 ccttgtatacaaagt 42446680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 5e-23; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 49 - 160
Target Start/End: Complemental strand, 32740588 - 32740477
Alignment:
Q  49 tcggatagtaatgtacaaggaaaacattcttccaattggaggaataagtaattagttatttttcttgttttcaccaggagcaaaatgattatggtgattg 148  Q
    ||||||| |||| ||| |||| || ||||||| ||||||||||| |||||||||||| ||||||||||||||||  |||| |||||||||  ||| ||||    
T  32740588 tcggataataatatacgaggataatattcttcaaattggaggaacaagtaattagttttttttcttgttttcactgggaggaaaatgatttcggtcattg 32740489  T
Q  149 ggatattacctt 160  Q
    ||||||||||||    
T  32740488 ggatattacctt 32740477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 49 - 171
Target Start/End: Original strand, 29131529 - 29131650
Alignment:
Q  49 tcggatagtaatgtacaaggaaaacattcttccaattggaggaataagtaattagttatttttcttgttttcaccaggagcaaaatgattatggtgattg 148  Q
    ||||||| |||| |||||||| |||||||||||||||||||||| |||||| ||||| || ||| |||||||||  |||| |||||||||  ||| ||||    
T  29131529 tcggataataatatacaaggataacattcttccaattggaggaacaagtaagtagtt-ttcttcctgttttcactgggaggaaaatgattgcggtcattg 29131627  T
Q  149 ggatattaccttgtatgcaaagt 171  Q
    || ||||||||||||| ||||||    
T  29131628 ggctattaccttgtattcaaagt 29131650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 57 - 169
Target Start/End: Original strand, 29145525 - 29145637
Alignment:
Q  57 taatgtacaaggaaaacattcttccaattggaggaataagtaattagttatttttcttgttttcaccaggagcaaaatgattatggtgattgggatatta 156  Q
    |||| ||||||||| ||||||||||||||||||||  |||||  || || ||||||||||| |||||| |||  | |||||| ||||  ||| |||||||    
T  29145525 taatatacaaggaatacattcttccaattggaggagcaagtagctaattgtttttcttgttatcaccaagaggtatatgattgtggttgttgagatatta 29145624  T
Q  157 ccttgtatgcaaa 169  Q
    | || ||||||||    
T  29145625 cattttatgcaaa 29145637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 62 - 172
Target Start/End: Complemental strand, 33311 - 33200
Alignment:
Q  62 tacaaggaaaacattcttccaattggaggaataagtaattagttatttttcttgttttcaccaggagcaaaatgattatggtgattggga-tattacctt 160  Q
    |||||||||||||||||| | |||| ||||||||||||||| ||||||||| ||||||||||| |||  | |||||| |||| |||| || |||||||||    
T  33311 tacaaggaaaacattcttgccattgaaggaataagtaattaattatttttcatgttttcaccaagaggtatatgattgtggttattgagattattacctt 33212  T
Q  161 gtatgcaaagtg 172  Q
    || |||||||||    
T  33211 gtgtgcaaagtg 33200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 62 - 172
Target Start/End: Complemental strand, 39662 - 39551
Alignment:
Q  62 tacaaggaaaacattcttccaattggaggaataagtaattagttatttttcttgttttcaccaggagcaaaatgattatggtgattg-ggatattacctt 160  Q
    ||||||||||||||||||  ||||| ||||||||||||||| ||||||||||||||||||||| |||  | |||||  |||| |||| | ||||||||||    
T  39662 tacaaggaaaacattcttgtaattgaaggaataagtaattaattatttttcttgttttcaccaagaggtatatgatcgtggttattgagaatattacctt 39563  T
Q  161 gtatgcaaagtg 172  Q
    || |||||||||    
T  39562 gtgtgcaaagtg 39551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0613 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0613
Description:

Target: scaffold0613; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 49 - 171
Target Start/End: Original strand, 418 - 534
Alignment:
Q  49 tcggatagtaatgtacaaggaaaacattcttccaattggaggaataagtaattagttatttttcttgttttcaccaggagcaaaatgattatggtgattg 148  Q
    ||||||| |||| ||||||||||||||||||  || |||||||||| ||||||| ||     |||  ||||| ||| |||  | ||||||||||| ||||    
T  418 tcggataataatatacaaggaaaacattcttgaaaatggaggaataggtaattaatt-----tcta-ttttctccaagaggtatatgattatggttattg 511  T
Q  149 ggatattaccttgtatgcaaagt 171  Q
     ||||||||||||||||||||||    
T  512 agatattaccttgtatgcaaagt 534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 48 - 95
Target Start/End: Original strand, 32643169 - 32643216
Alignment:
Q  48 atcggatagtaatgtacaaggaaaacattcttccaattggaggaataa 95  Q
    ||||||||||| | |||||||||||| ||||||||||||| |||||||    
T  32643169 atcggatagtagtttacaaggaaaaccttcttccaattggtggaataa 32643216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 53 - 95
Target Start/End: Original strand, 43323012 - 43323054
Alignment:
Q  53 atagtaatgtacaaggaaaacattcttccaattggaggaataa 95  Q
    |||| ||| |||||||||||||| |||||||||||||||||||    
T  43323012 ataggaatttacaaggaaaacatgcttccaattggaggaataa 43323054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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