View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3238_high_15 (Length: 419)
Name: NF3238_high_15
Description: NF3238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3238_high_15 |
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Alignment Details
Target: chr3 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 16 - 401
Target Start/End: Complemental strand, 55329678 - 55329287
Alignment:
| Q |
16 |
catcatcaagaagtttgatattagagttgttgttctt------cttctcgagaagcagtgttttggtaatcaaattacagaaaagatagacaaattgaac |
109 |
Q |
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| T |
55329678 |
catcatcaagaagtttgatattagagttgttgttgttgttgttcttctcgagaagcagtgttttggtaatcaaattacagaaaagatagacaaattgaac |
55329579 |
T |
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| Q |
110 |
agaggggttaacgggaatgggataagcaatgcggctgaaagtatggagaggcatagcagaatcaacaagagcgacaattggaatgtgaagtttgaaagcc |
209 |
Q |
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| T |
55329578 |
agaggggttaacgggaatgggataagcaatgcggctgaaagtatggagaggcatagcagaatcaacaagagcgacaattggaatgtgaagtttgaaagcc |
55329479 |
T |
|
| Q |
210 |
tcgtcaataacagaagacttgctctcggtatcgacaatgacgatgcaatcgggaggctgagtgggaccgaagcaaagtttcttgttgcgagatcgaaact |
309 |
Q |
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| T |
55329478 |
tcgtcaataacagaagacttgctctcagtatcgacaatgacgatgcaatcgggaggctgagtgggaccgaagcaaagtttcttgttgcgagatcgaaact |
55329379 |
T |
|
| Q |
310 |
tcttgggactgttgctgttggtgagaaatccaccagtacgccagagagaattggaagagggactgtagcatccaacctttttggacataagt |
401 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55329378 |
tcttgggactgttgctgttggtgagaaatccaccagtacgccagagagaattggaagagggactgtagcatccaacctttttggacataagt |
55329287 |
T |
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