View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3238_high_17 (Length: 380)
Name: NF3238_high_17
Description: NF3238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3238_high_17 |
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Alignment Details
Target: chr8 (Bit Score: 284; Significance: 1e-159; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 19 - 370
Target Start/End: Original strand, 37008326 - 37008694
Alignment:
| Q |
19 |
ccatgatgactaacatatagcagcatacatggaacacttaacacttcacacccacctatccacttatttaatttaaggataataaaacttctacatgatt |
118 |
Q |
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| T |
37008326 |
ccatgatgactaacatatagcagcatacatggaacacttaacacttcacacccacctatccacttatttaatttaaggataataaaacttctacatgatt |
37008425 |
T |
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| Q |
119 |
caagaagtacataaagaacaggtgcaacaagaggtatgaaaattgnnnnnnncacacatatattag-----------------aggtatattagacttta |
201 |
Q |
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| T |
37008426 |
caagaagtacataaagaacaggtacaacaagaggtatgaaaattgaaaaacacacacatatataagttgaaccctaaattattaggtatattagacttta |
37008525 |
T |
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| Q |
202 |
atatagtaaaatttaagcagcattgatggcaattttcattccggactcgcagtgacccacaaagttgcaaatgaagtagttttgtcccctagcaagcctg |
301 |
Q |
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| T |
37008526 |
atatagtaaaatttaagcagcattgatggcaattttcattccggactcgcagtgacccacaaagttgcaaatgaagtagttttgtcccctagcaagcctg |
37008625 |
T |
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| Q |
302 |
atctgatcctttcctgacctatacacttttgctcctcttggagtcttgcaactatcataccctcctttg |
370 |
Q |
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| T |
37008626 |
atctgatcctttcctgacctatacacttttgctcctcttggagtcttgcaactatcataccctcctttg |
37008694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 216 - 330
Target Start/End: Complemental strand, 36901725 - 36901611
Alignment:
| Q |
216 |
aagcagcattgatggcaattttcattccggactcgcagtgacccacaaagttgcaaatgaagtagttttgtcccctagcaagcctgatctgatcctttcc |
315 |
Q |
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| T |
36901725 |
aagcagcattgatggcaattttcacaccagaaccgcagtgacctggaaaattgcacatgaagtagttttgtcccttagcaagcctgacccgatccttccc |
36901626 |
T |
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| Q |
316 |
tgacctatacacttt |
330 |
Q |
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| T |
36901625 |
tgaccgatacacttt |
36901611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 77 - 159
Target Start/End: Original strand, 37011731 - 37011810
Alignment:
| Q |
77 |
tccacttatttaatttaaggataataaaacttctacatgattcaagaagtacataaagaacaggtgcaacaagaggtatgaaa |
159 |
Q |
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| T |
37011731 |
tccacttatttaatttaaggatac---aacttctacgtgattcaagaagtatataaagaacaggtacaagaagaggtatgaaa |
37011810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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