View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3238_high_19 (Length: 370)
Name: NF3238_high_19
Description: NF3238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3238_high_19 |
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Alignment Details
Target: chr4 (Bit Score: 178; Significance: 6e-96; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 186 - 367
Target Start/End: Complemental strand, 31770684 - 31770503
Alignment:
| Q |
186 |
tcaacgtagccattgagaatttcagcaattcctcaatccaatcgacatcaaaaacaaaaatttgaacaaacccattaacaattaactgcttaagaaaaat |
285 |
Q |
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| T |
31770684 |
tcaacgtagccattgagaatttcagcaattcctcaatccaatcgacatcaaaaacaaaaatttgaacaaacccattaacaattgactgcttaagaaaaat |
31770585 |
T |
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| Q |
286 |
gggttggaattagatttacaaaacaacatgttttttcaattttcgttttcactacagaaactcaatcatatgaaaccttcat |
367 |
Q |
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| T |
31770584 |
gggttggaattagatttacaaaacaacatgttttttcaattttcgttttcactacagaaactcaatcatatgaaaccttcat |
31770503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 18 - 157
Target Start/End: Complemental strand, 31770842 - 31770703
Alignment:
| Q |
18 |
taaaccacataatatattaaatattatatgctcaaatttatattccagaatagattcgatccaatttcactgatgggaaccacataatgaatttgagcca |
117 |
Q |
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| T |
31770842 |
taaaccacataatatattaaatattatatgctcaaatttatattccagaatagattcgatccaatttcactgatgggaaccacataatgaatttgagcca |
31770743 |
T |
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| Q |
118 |
caacttaataaaaagattcaaacactttaacaacaacaac |
157 |
Q |
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| T |
31770742 |
caacttaataaaaagattcaaacactttaacaacaacaac |
31770703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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