View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3238_high_20 (Length: 367)
Name: NF3238_high_20
Description: NF3238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3238_high_20 |
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Alignment Details
Target: chr2 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 19 - 356
Target Start/End: Complemental strand, 19474969 - 19474632
Alignment:
| Q |
19 |
gtagattctagcatcagctatgtttcttttgttcgaggaacggattccggataatgatcttttcaatgaagttaaggttgattgatgaagttccttgcag |
118 |
Q |
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| T |
19474969 |
gtagattctagcatcagctatgtttcttttgttcgaggaacggattccggataatgatcttttcaatgaagttaaggttgattgatgaagttccttgcag |
19474870 |
T |
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| Q |
119 |
tcttgaattgatcctcgttgtttctctacgatattcgatgttccaacgtcgtggaaaagattcgagagctttgtggtttcggatattgctagttgaagtg |
218 |
Q |
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| T |
19474869 |
tcttgaattgatcctcgttgtttctctacgatattcgatgttccaacgtcgtggaaaagattcgagagctttgtggtttcggatattgctagttgaagtg |
19474770 |
T |
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| Q |
219 |
aatgaagaaggtaggttatgatgtttgggtttatgtttatggatatggaaagttttaatgagttgaaacaaagtttagggtatggtgttgttttgcataa |
318 |
Q |
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| T |
19474769 |
aatgaagaaggtaggttatgatgtttgggtttatgtttatggatatggaaagttttaatgagttgaaacaaagtttagggtatggtgttgttttgcataa |
19474670 |
T |
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| Q |
319 |
agattttaaggaagtgagtttgttgggatttagtgatg |
356 |
Q |
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| T |
19474669 |
agattttaaggaagtgagtttgttgggatttagtgatg |
19474632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 177 - 285
Target Start/End: Complemental strand, 51546918 - 51546810
Alignment:
| Q |
177 |
gattcgagagctttgtggtttcggatattgctagttgaagtgaatgaagaaggtaggttatgatgtttgggtttatgtttatggatatggaaagttttaa |
276 |
Q |
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| T |
51546918 |
gattagagagctttgtggtttcagatattgatacttggagggaatgaagaaggatgttaatgatgtttggatttatgtctattgagatggagagttttga |
51546819 |
T |
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| Q |
277 |
tgagttgaa |
285 |
Q |
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| T |
51546818 |
tgaattgaa |
51546810 |
T |
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