View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3238_high_25 (Length: 327)
Name: NF3238_high_25
Description: NF3238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3238_high_25 |
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Alignment Details
Target: chr2 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 37235293 - 37235606
Alignment:
| Q |
1 |
tgtctgctcatttggttgtttttgctttgggagaatatgctaaacaggataactttggtgtcactttcgaattgtgtttgtctgcattgactagcatact |
100 |
Q |
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| T |
37235293 |
tgtctgctcatttggttgtttttgctttgcgagaatatgctaaacaggataactttggtgtcactttctaattgtgtttgtctgcattgactagcatact |
37235392 |
T |
|
| Q |
101 |
agtatgtccaagttgatataatcacaaagccaagttaaagttgttgtatcttatgcaaattggttcactgttcagaaaagtaaataacttttggctaact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
37235393 |
agtatgtccaagttgatataatcacaaagccaagttaaagttgttgtatcttatgcaaattggttcactgtttagaaaagtaaataacttttggctaact |
37235492 |
T |
|
| Q |
201 |
tgaataattcaaaaggaaaacattatgttaagggaaaagaaatcacctattttttaaaacagaatataaagcgtttgatttttactggaagtcagtccaa |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
37235493 |
tgaataattcaaaaggaaaacattatgttaagggaaaagaaatcacctattttttaaaacagaatataaagcgtttgatatttactggaagtcagtccaa |
37235592 |
T |
|
| Q |
301 |
tttcctgaccattc |
314 |
Q |
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|||||||||||||| |
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| T |
37235593 |
tttcctgaccattc |
37235606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 28306818 - 28306505
Alignment:
| Q |
1 |
tgtctgctcatttggttgtttttgctttgggagaatatgctaaacaggataactttggtgtcactttcgaattgtgtttgtctgcattgactagcatact |
100 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
28306818 |
tgtctgctcatttggttgtttttgctttgcgagaatatgctaaacaggataactttggtgtcactttctaattgtgtttgtctgcattgactagcatact |
28306719 |
T |
|
| Q |
101 |
agtatgtccaagttgatataatcacaaagccaagttaaagttgttgtatcttatgcaaattggttcactgttcagaaaagtaaataacttttggctaact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
28306718 |
agtatgtccaagttgatataatcacaaagccaagttaaagttgttgtatcttatgcaaattggttcactgtttagaaaagtaaataacttttggctaact |
28306619 |
T |
|
| Q |
201 |
tgaataattcaaaaggaaaacattatgttaagggaaaagaaatcacctattttttaaaacagaatataaagcgtttgatttttactggaagtcagtccaa |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |
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| T |
28306618 |
tgaataattcaaaaggaaaacattatgttaagggaaaagaaatcacctattttttaaaacagaatattaagcgtttgatatttactggaagtcagtccaa |
28306519 |
T |
|
| Q |
301 |
tttcctgaccattc |
314 |
Q |
| |
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|||||||||||||| |
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| T |
28306518 |
tttcctgaccattc |
28306505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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