View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3238_high_26 (Length: 314)
Name: NF3238_high_26
Description: NF3238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3238_high_26 |
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Alignment Details
Target: chr4 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 10584823 - 10584624
Alignment:
| Q |
1 |
caattaataagatatacaagtctttcaaaactgttttagttgtcatgtttccaaatagctttattttcattatgcattagcgaatagaaaatgactaaac |
100 |
Q |
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| T |
10584823 |
caattaataagatatgcaagtcttgcaaaacttttttagttgtcatgcttccaaatagctttattttcattattccttatctaatagaaaatgactaaac |
10584724 |
T |
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| Q |
101 |
c--tctcgtaccaagctctaggaggaggttgtttgagtcggaaaagagttcgtttcaatttgaaaacctaatcggagtgttaaaagttttcaaaattggg |
198 |
Q |
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| T |
10584723 |
cttttttataccaagctct---aggaggttgtttgagtcggtaaagagttcgtttcaatttg-aaacctaatccgggtgttaaaagttttcaaaattggg |
10584628 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 244 - 314
Target Start/End: Complemental strand, 10584627 - 10584557
Alignment:
| Q |
244 |
aggtcttttaacataaccggtgcatgatcgtaacggcctctgataccacttgttagttagtatggttatct |
314 |
Q |
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| T |
10584627 |
aggtcttttaacataaccggtgcatgatcgtaactgcctctgataccacttgttagttagtatggctatct |
10584557 |
T |
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