View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3238_high_3 (Length: 626)
Name: NF3238_high_3
Description: NF3238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3238_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 21 - 81
Target Start/End: Original strand, 16974639 - 16974699
Alignment:
| Q |
21 |
cttgcataaaaacatgagtgcatctaggcagtcccgccatgaaacagaaatgcttgtgatg |
81 |
Q |
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| T |
16974639 |
cttgcataaaaacatgagtgcatctaggaagtcccgccatgaaacagaaatgcttgtgatg |
16974699 |
T |
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Target: chr1 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 21 - 81
Target Start/End: Original strand, 23027503 - 23027563
Alignment:
| Q |
21 |
cttgcataaaaacatgagtgcatctaggcagtcccgccatgaaacagaaatgcttgtgatg |
81 |
Q |
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| T |
23027503 |
cttgcataaaaacatgagtgcatctaggcaatcccgccatgaaacagaaatgcttgtgatg |
23027563 |
T |
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Target: chr3 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 21 - 81
Target Start/End: Complemental strand, 12699184 - 12699124
Alignment:
| Q |
21 |
cttgcataaaaacatgagtgcatctaggcagtcccgccatgaaacagaaatgcttgtgatg |
81 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |
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| T |
12699184 |
cttgcataaaaacatgagtgcatctaggaagtcccgccatgaaacagaaatgattgtgatg |
12699124 |
T |
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Target: chr7 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 25 - 81
Target Start/End: Original strand, 48777891 - 48777947
Alignment:
| Q |
25 |
cataaaaacatgagtgcatctaggcagtcccgccatgaaacagaaatgcttgtgatg |
81 |
Q |
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||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |
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| T |
48777891 |
cataaaaacatgagtgcatcttggcactcccgccatgaaacagaaatgcttgtgatg |
48777947 |
T |
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Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 46562351 - 46562408
Alignment:
| Q |
21 |
cttgcataaaaacatgagtgcatctaggcagtcccgccatgaaacagaaatgcttgtg |
78 |
Q |
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||||||||||| ||||| |||||||||| ||||||||||||||||| || |||||||| |
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| T |
46562351 |
cttgcataaaagcatgactgcatctaggaagtcccgccatgaaacataagtgcttgtg |
46562408 |
T |
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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 356245 - 356188
Alignment:
| Q |
21 |
cttgcataaaaacatgagtgcatctaggcagtcccgccatgaaacagaaatgcttgtg |
78 |
Q |
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|||||| |||| |||||||||| |||| | |||||||||||||||||||||| |||| |
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| T |
356245 |
cttgcagaaaagcatgagtgcacctagaaattcccgccatgaaacagaaatgcatgtg |
356188 |
T |
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