View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3238_high_33 (Length: 265)
Name: NF3238_high_33
Description: NF3238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3238_high_33 |
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Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 19 - 255
Target Start/End: Original strand, 31931142 - 31931377
Alignment:
| Q |
19 |
aatatagtaccagatatttacatgaggaaaagcctcaaaacatttgtaacttggctgtgttttatccccttgttctcatgcaaggtccttcaatgcctct |
118 |
Q |
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| T |
31931142 |
aatatagtaccagatatatacatgaggaaaagcctcaaaacatttgtaacttggctgt-ttttatccccttgttctcatgcaaggtccttcaatgcctct |
31931240 |
T |
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| Q |
119 |
ctataacgttctctatcatttttaggcctgcttgttataagagcaaggatatcattgtctcaggacactttccttggatttgtatacttttcaagacctt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31931241 |
ctataacgttctctatcatttttaggcctgcttgttataagagcaaggatatcattgtctcaggacactttccttggatttgtatacttttcaagacctt |
31931340 |
T |
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| Q |
219 |
aatattgatcctttgtcccaccacttctagacctatg |
255 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
31931341 |
aatattgatcctttgtcccaccacttctagacctatg |
31931377 |
T |
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