View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3238_high_4 (Length: 583)
Name: NF3238_high_4
Description: NF3238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3238_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 454; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 69 - 566
Target Start/End: Original strand, 1832853 - 1833344
Alignment:
| Q |
69 |
atactagtacagatgagaatactgcaaatgtagatacacaataacattttaatatgtctaaaataacttatgcttacttttcaaatgctatactatagcc |
168 |
Q |
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| T |
1832853 |
atactagtacagatgagaatactgcaaatgtagatacacaataacattttaatatgtctaaaataacttatgcttacttttcaaatgctatactatagcc |
1832952 |
T |
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| Q |
169 |
atgtcatgtgctataattttttagaattcagtttatcaatgtgtccatgtccttttgcacccatgtggtatacatgctttcaaggtgtctggccactggc |
268 |
Q |
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| T |
1832953 |
atgtcatgtgctataattttttagaattcagtttatcaatgtgtccatgtccttttgcacccatgttgtatacatgctttcaaggtgtct---cactggc |
1833049 |
T |
|
| Q |
269 |
accgcactccactattaactattatgttttatacatttggtgtttgctttctgattgggttatcaagaacttacaatctctttttatgaactttgaagta |
368 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
1833050 |
accacactccactattaactattatgttttatacatttggtgtttgctttctgattgggttatcaagaacttacaatgtctttttatgaactttgaagta |
1833149 |
T |
|
| Q |
369 |
acgagtaccattttaaatttgtaaaatctacttcttttgagattactagatgatcatgatggtattaattaacgtgaaagttcttgatttcacaatttct |
468 |
Q |
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| T |
1833150 |
acgagtaccattttaaatttgtaaaatctacttcttttgagattactagatgatcatgatggtattaattaacgtgaaagttcttgatttcacaatttct |
1833249 |
T |
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| Q |
469 |
ttggctctcattttttcatcaatataggaattaatgttaatttagtccaaaatctgttaagatcttatgtgtcatctacttgtgtctctgcatgctag |
566 |
Q |
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| T |
1833250 |
ttggctctcattttttcatcaatataggagttaatgttaatttagtccaaaatctgttaaga---tatgtgtcatctacttgtgtctctgcatgctag |
1833344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 100; Significance: 3e-49; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 114 - 400
Target Start/End: Original strand, 946676 - 946975
Alignment:
| Q |
114 |
attttaatatgtctaaaataacttatgctt---acttttcaaatgctatactatagccatgtcatgtgctataattttttagaattcagtttatcaatgt |
210 |
Q |
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|||||| |||||||||||||||| ||||| |||||| |||||| ||| |||||| |||||||| | | | ||||| |||| ||||||||||||| |
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| T |
946676 |
attttattatgtctaaaataactgatgctgctaacttttaaaatgccatattatagctgtgtcatgtccgaaatatttttttaatttagtttatcaatgt |
946775 |
T |
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| Q |
211 |
gtccatgtccttttgcacccatgtg-------gtatacatgctttcaaggtgtctggccactggcaccgcactccactattaactattatgttttataca |
303 |
Q |
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| T |
946776 |
gtcg-tatccttttgcacccatgtaatatgttgtatacctgctttcaaggtgtctggccactggcactgcactccgctattaactattatgttttatata |
946874 |
T |
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| Q |
304 |
----tttggtgtttgctttctgattgggttatcaagaacttacaatctctttttatgaactttgaagtaacgagtaccattttaaatttgtaaaatctac |
399 |
Q |
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| T |
946875 |
aatctttggtgtttggtttctgattgggtcatcgaaaacttacaatgccttattctgatctttgaagtaacgagtacgatattaaatttgtaaaatctac |
946974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 436 - 566
Target Start/End: Original strand, 947107 - 947236
Alignment:
| Q |
436 |
attaacgtgaaagttcttgatttcacaatttctttggctctcattttttcatcaatataggaattaatgttaatttagtccaaaatctgttaagatctta |
535 |
Q |
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||||||||||||||||||||||||| |||||||||||||| | | |||||||||||||||| |||||||||||||||| |||||||||| || ||||| |
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| T |
947107 |
attaacgtgaaagttcttgatttcataatttctttggctccc-tggtttcatcaatataggagctaatgttaatttagtctaaaatctgtttagctctta |
947205 |
T |
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| Q |
536 |
tgtgtcatctacttgtgtctctgcatgctag |
566 |
Q |
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| T |
947206 |
tgtgtcatttacttgtgtctctgtatgctag |
947236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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