View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3238_high_42 (Length: 226)
Name: NF3238_high_42
Description: NF3238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3238_high_42 |
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Alignment Details
Target: chr8 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 21 - 214
Target Start/End: Complemental strand, 40667874 - 40667671
Alignment:
| Q |
21 |
taagaggcctaaaatgaaagcttcttagaataaagacattttcaatcaatgaaatgagcaacaagttatagctgttagcgtaacaaactctatccctctt |
120 |
Q |
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| T |
40667874 |
taagaggcctaaaaagaaagcttcttagaataaagacattttcaatcaatgaaatgagcaacaagttatagctgttagcgtaacaaactctatccctctt |
40667775 |
T |
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| Q |
121 |
g--------------atttttatgcatattcatatatttcacaacttgatcatgtgacctgtctgtctctttgtggaatatgctatttaaggatccctcg |
206 |
Q |
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| T |
40667774 |
gattgctaagatattatttttatgcatattcatatatttcacaacttgatcatgtgac----ctgtctctttgtggaatatgctatttaaggatccctcg |
40667679 |
T |
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| Q |
207 |
tctctgct |
214 |
Q |
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|||||||| |
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| T |
40667678 |
tctctgct |
40667671 |
T |
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