View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3238_high_47 (Length: 204)
Name: NF3238_high_47
Description: NF3238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3238_high_47 |
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Alignment Details
Target: chr2 (Bit Score: 116; Significance: 3e-59; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 17 - 168
Target Start/End: Complemental strand, 6813930 - 6813784
Alignment:
| Q |
17 |
aatatcgatgattgatttaatggtcaaatttttagattacttaatttagtgaatttaatccttacatactcttcttacttcctccaagcttacatcaacg |
116 |
Q |
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| T |
6813930 |
aatatcgatgacttatttaatggtcaaatttttagattactta-----gtgaatttaatccttacatacccttcttacttcctccaagcttacatcaaag |
6813836 |
T |
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| Q |
117 |
cataaatttgtgaatatggaaacaatagaatagtattcatagtgactactag |
168 |
Q |
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| T |
6813835 |
cataaatttgtgaatatggaaacaatagaatagtattcatagtgactactag |
6813784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 71 - 164
Target Start/End: Complemental strand, 6820423 - 6820330
Alignment:
| Q |
71 |
ttaatccttacatactcttcttacttcctccaagcttacatcaacgcataaatttgtgaatatggaaacaatagaatagtattcatagtgacta |
164 |
Q |
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| T |
6820423 |
ttaatccttacacattctttttacttccgacaagcttacttcaacacattcttttgtgaatatggaaacaataaaataatatgcaaagtgacta |
6820330 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 64 - 148
Target Start/End: Complemental strand, 6834889 - 6834807
Alignment:
| Q |
64 |
agtgaatttaatccttacatactcttcttacttcctccaagcttacatcaacgcataaatttgtgaatatggaaacaatagaata |
148 |
Q |
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| T |
6834889 |
agtgaatttaatccttacatattctttttacttcctccaagtttacttcaacatatacttttgtga--atggaaacaataaaata |
6834807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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